Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 5.5e-303 1043.5 531 100.0
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 5.0e-179 631.7 453 66.9
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 8.9e-176 620.9 411 71.3
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 3.4e-175 619.0 470 67.4
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 7.5e-175 617.8 467 66.8
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 1.3e-174 617.1 447 67.1
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.9e-173 613.2 459 65.8
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 3.2e-173 612.5 457 66.7
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 7.0e-173 611.3 471 66.0
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 2.0e-172 609.8 418 69.4
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.0e-172 609.8 418 69.4
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.7e-172 609.4 396 74.0
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.6e-172 608.6 398 72.9
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 7.8e-172 607.8 444 66.4
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.3e-171 607.1 468 65.2
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 1.3e-171 607.1 459 66.7
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.3e-171 606.3 409 69.9
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 5.0e-171 605.1 447 67.8
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.5e-170 603.6 437 69.1
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 7.3e-170 601.3 434 67.1
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 7.3e-170 601.3 396 73.2
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 9.5e-170 600.9 438 66.7
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 9.5e-170 600.9 444 68.5
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.2e-169 600.5 449 66.1
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.6e-169 600.1 406 70.9
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 4.7e-169 598.6 435 68.3
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 4.4e-167 592.0 436 67.2
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 7.5e-167 591.3 455 65.7
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 7.5e-167 591.3 451 65.2
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 2.9e-166 589.3 463 64.1
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.1e-165 587.4 394 71.3
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.4e-165 587.0 397 72.0
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 2.4e-165 586.3 434 67.1
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 2.7e-164 582.8 460 63.7
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 2.7e-164 582.8 497 60.6
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 2.7e-164 582.8 441 66.4
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 3.5e-164 582.4 409 68.7
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 6.0e-164 581.6 440 66.1
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 6.0e-164 581.6 440 66.1
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 7.8e-164 581.3 470 63.2
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 7.8e-164 581.3 474 63.3
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 1.0e-163 580.9 452 63.7
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 1.3e-163 580.5 396 68.9
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 1.3e-163 580.5 466 63.3
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 2.3e-163 579.7 453 62.9
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 2.3e-163 579.7 399 68.7
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 2.3e-163 579.7 474 62.9
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 3.9e-163 578.9 466 62.9
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 1.5e-162 577.0 468 61.8
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 1.9e-162 576.6 443 64.3
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 3.3e-162 575.9 439 64.7
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 3.3e-162 575.9 390 69.7
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 3.3e-162 575.9 366 71.6
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 4.3e-162 575.5 396 69.2
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 4.3e-162 575.5 396 69.2
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 5.6e-162 575.1 396 68.9
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.6e-162 575.1 405 69.1
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 7.3e-162 574.7 399 68.2
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 7.3e-162 574.7 450 63.6
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 7.3e-162 574.7 399 68.2
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 2.8e-161 572.8 469 61.8
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 2.8e-161 572.8 462 61.7
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 8.1e-161 571.2 366 71.6
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 1.1e-160 570.9 466 62.2
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-160 570.5 396 68.7
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 1.4e-160 570.5 366 71.3
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 3.1e-160 569.3 484 62.2
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 5.2e-160 568.5 366 71.9
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 6.8e-160 568.2 470 61.7
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 1.2e-159 567.4 366 71.9
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 7.6e-159 564.7 466 63.1
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 1.7e-158 563.5 366 70.2
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 6.4e-158 561.6 496 58.3
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 6.4e-158 561.6 416 65.1
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 3.2e-157 559.3 356 71.9
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 3.2e-157 559.3 366 70.2
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 4.1e-157 558.9 466 59.9
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 5.4e-157 558.5 492 60.2
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 2.3e-155 553.1 452 61.5
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 2.3e-155 553.1 366 69.4
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 8.6e-155 551.2 427 63.7
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.1e-154 550.8 333 76.6
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 5.6e-154 548.5 471 59.4
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 7.3e-154 548.1 451 61.0
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 1.2e-153 547.4 537 52.3
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 2.8e-153 546.2 371 70.1
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.1e-152 544.3 419 64.0
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 1.1e-152 544.3 475 56.8
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 3.1e-152 542.7 437 60.9
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 3.1e-152 542.7 370 69.2
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 4.0e-152 542.3 448 61.4
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 2.0e-151 540.0 434 60.6
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 4.4e-151 538.9 434 60.6
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 4.4e-151 538.9 406 65.5
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.3e-150 537.3 353 71.4
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.1e-149 534.3 438 61.6
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 5.4e-149 531.9 443 61.4
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.6e-148 530.4 444 61.5
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 2.1e-148 530.0 406 64.5
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 1.7e-147 526.9 447 59.1
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 2.3e-147 526.6 445 61.1
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 5.6e-146 521.9 420 62.4
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.8e-144 516.9 333 73.0
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 2.4e-144 516.5 373 68.1
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 1.2e-143 514.2 329 72.0
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 2.6e-143 513.1 415 61.2
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 7.6e-143 511.5 364 65.9
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 6.4e-142 508.4 490 56.5
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.7e-139 500.4 598 47.5
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 4.3e-138 495.7 344 68.3
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 4.3e-138 495.7 344 68.3
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.1e-136 491.1 406 56.4
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 5.8e-135 485.3 421 59.4
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 9.9e-135 484.6 368 65.5
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.4e-133 480.7 368 64.9
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 1.0e-131 474.6 420 55.7
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.0e-131 474.6 401 60.6
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 1.3e-129 467.6 448 55.6
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 6.2e-129 465.3 395 58.2
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.8e-128 463.8 309 69.9
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 2.6e-127 459.9 367 59.4
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.0e-126 458.0 365 56.4
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 7.9e-124 448.4 353 59.5
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 2.3e-123 446.8 307 67.8
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 9.0e-120 434.9 367 59.9
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.2e-118 430.3 369 55.8
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 6.5e-118 428.7 395 54.7
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.2e-116 424.5 312 68.9
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 8.5e-110 401.7 248 77.0
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.7e-108 396.7 283 67.8
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 6.7e-107 392.1 395 50.9
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 1.5e-103 380.9 217 79.3
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 2.2e-102 377.1 255 71.4
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 2.7e-92 343.6 206 75.7
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 2.5e-77 293.9 368 42.4
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 9.5e-69 265.4 265 54.7
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 3.5e-63 246.9 391 37.3
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 3.1e-59 233.8 275 45.5
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.9e-48 198.0 176 58.0
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 3.9e-38 163.7 207 48.8
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 5.6e-37 159.8 98 72.4
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.4e-35 155.2 85 83.5
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 4.6e-23 113.6 77 70.1
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 9.0e-19 99.4 108 47.2
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 4.5e-18 97.1 95 51.6
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 2.2e-17 94.7 93 46.2
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 7.1e-16 89.7 75 62.7
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-15 87.8 55 70.9
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-15 87.8 55 70.9
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-15 87.8 55 70.9
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 2.7e-15 87.8 53 73.6
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 7.9e-15 86.3 55 69.1
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.3e-14 84.7 62 59.7
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.1e-13 82.4 54 68.5
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 1.2e-07 62.4 60 50.0
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 1.3e-06 58.9 32 75.0


User provided reference genes

Program Settings