Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 8.7e-235 816.6 417 100.0
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 2.3e-139 499.6 343 74.9
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 4.4e-138 495.4 343 74.6
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 7.5e-138 494.6 345 74.5
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 9.8e-138 494.2 355 72.4
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 1.3e-137 493.8 426 63.6
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 1.7e-137 493.4 429 63.4
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.2e-137 493.0 355 72.1
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 3.7e-137 492.3 355 71.3
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 6.4e-137 491.5 345 73.9
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 2.4e-136 489.6 425 63.5
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 1.2e-135 487.3 412 63.6
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 2.1e-135 486.5 351 71.5
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 3.5e-135 485.7 356 71.3
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 6.0e-135 485.0 351 71.5
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 6.0e-135 485.0 365 71.0
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.0e-134 484.2 354 71.5
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.3e-134 483.8 358 69.0
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 2.3e-134 483.0 356 71.1
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 3.0e-134 482.6 355 71.5
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 3.9e-134 482.3 347 70.9
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 3.9e-134 482.3 352 71.0
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 3.9e-134 482.3 412 64.6
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 5.1e-134 481.9 412 64.3
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.5e-133 480.3 360 70.3
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.9e-133 479.9 352 70.5
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.9e-133 479.9 352 70.2
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 5.6e-133 478.4 419 64.2
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.6e-133 478.4 353 70.8
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 5.6e-133 478.4 355 69.3
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 7.3e-133 478.0 351 71.8
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 9.5e-133 477.6 343 71.4
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 9.5e-133 477.6 344 73.0
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 1.2e-132 477.2 360 69.4
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 1.2e-132 477.2 356 70.2
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 1.6e-132 476.9 341 71.6
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 2.1e-132 476.5 359 70.2
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 2.8e-132 476.1 344 69.2
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 2.8e-132 476.1 394 64.5
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 3.6e-132 475.7 341 71.3
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 3.6e-132 475.7 294 80.3
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 3.6e-132 475.7 340 72.4
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 6.2e-132 474.9 342 72.2
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 8.1e-132 474.6 338 71.6
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 1.1e-131 474.2 354 70.1
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 1.4e-131 473.8 348 70.4
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 1.8e-131 473.4 339 71.7
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 1.8e-131 473.4 344 72.1
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 2.3e-131 473.0 418 61.7
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 3.1e-131 472.6 350 67.7
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 3.1e-131 472.6 350 68.3
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 6.8e-131 471.5 344 70.3
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.2e-130 470.7 291 80.8
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.2e-130 470.7 354 66.4
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 3.4e-130 469.2 312 74.4
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 4.4e-130 468.8 359 67.1
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 9.9e-130 467.6 354 66.7
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 2.9e-129 466.1 294 79.9
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 2.9e-129 466.1 344 69.5
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 1.1e-128 464.2 322 73.6
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.4e-128 463.8 338 69.8
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 4.1e-128 462.2 403 63.3
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 9.2e-128 461.1 360 64.4
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 1.6e-127 460.3 366 65.3
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.7e-126 456.8 356 67.1
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 3.0e-126 456.1 412 60.7
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 3.9e-126 455.7 357 66.7
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 2.5e-125 453.0 357 65.8
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 9.6e-125 451.1 322 72.7
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 1.6e-124 450.3 347 68.3
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.6e-124 450.3 365 64.1
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.8e-124 449.5 433 58.4
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 3.1e-123 446.0 395 62.8
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 2.0e-122 443.4 329 68.1
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 9.9e-122 441.0 275 80.0
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 3.8e-121 439.1 348 66.1
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 3.8e-121 439.1 342 67.0
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 6.4e-121 438.3 379 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 1.4e-120 437.2 371 62.8
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 2.1e-119 433.3 275 78.2
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 2.1e-119 433.3 291 73.9
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.0e-118 431.0 341 67.2
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.7e-113 413.7 261 79.7
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 6.4e-113 411.8 574 46.5
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 6.0e-111 405.2 375 57.6
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 6.0e-111 405.2 308 68.5
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.9e-109 400.2 379 56.7
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.9e-109 400.2 313 67.7
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 5.8e-106 388.7 453 51.0
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 4.9e-105 385.6 332 61.4
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 3.2e-104 382.9 405 56.8
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 1.6e-100 370.5 248 74.2
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 3.7e-100 369.4 344 59.3
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 2.6e-98 363.2 391 51.2
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 4.9e-97 359.0 312 61.5
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 7.9e-95 351.7 330 58.2
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 5.7e-93 345.5 354 53.7
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 2.0e-90 337.0 258 69.4
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 2.7e-87 326.6 232 72.0
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 5.1e-86 322.4 247 69.2
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 9.7e-85 318.2 250 67.2
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 2.4e-83 313.5 336 48.5
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 6.9e-83 312.0 248 68.1
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 5.0e-81 305.8 273 60.1
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 3.0e-78 296.6 293 57.3
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 9.7e-77 291.6 440 42.0
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 5.0e-73 279.3 198 72.2
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 5.3e-67 259.2 157 79.0
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 9.4e-64 248.4 157 74.5
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 3.1e-59 233.4 150 74.7
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 5.5e-56 222.6 199 62.3
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 8.0e-55 218.8 196 63.3
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 5.0e-41 172.9 219 47.5
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 1.8e-30 137.9 136 58.8
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 6.4e-28 129.4 119 59.7
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 2.0e-26 124.4 119 58.0
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 1.1e-22 112.1 106 56.6
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 1.1e-19 102.1 93 58.1
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 1.9e-19 101.3 92 59.8
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 3.5e-18 97.1 256 30.1
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 3.1e-14 84.0 156 48.1
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 4.4e-13 80.1 85 52.9
Pp3s42_60 Physcomitrium patens HOM05D000182 ORTHO05D011688 2.2e-12 77.8 298 25.8
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 7.1e-11 72.8 35 94.3
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 1.8e-06 58.2 127 37.8


User provided reference genes

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