Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 0.0e+00 2311.2 1189 100.0
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 8.9e-75 286.6 1118 28.8
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 4.6e-71 274.2 1294 26.2
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 4.7e-68 264.2 1118 26.1
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 2.2e-65 255.4 1091 27.0
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 5.4e-64 250.8 1167 27.2
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 2.7e-63 248.4 1186 27.7
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 1.4e-59 236.1 1089 25.5
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 3.1e-59 235.0 1045 28.4
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.9e-57 227.6 1062 27.1
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 8.4e-57 226.9 1088 25.7
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 3.2e-56 224.9 1062 27.1
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.2e-56 224.9 1080 26.1
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.7e-55 221.9 1083 25.7
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 7.8e-55 220.3 1244 26.4
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 5.1e-54 217.6 1231 26.6
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.1e-53 216.5 1053 26.0
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.1e-53 216.5 1084 26.3
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 4.9e-49 201.1 1171 25.5
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 1.4e-48 199.5 1110 27.1
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.4e-48 199.5 1076 26.7
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.0e-47 194.1 989 26.1
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 3.0e-46 191.8 1071 26.4
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.9e-46 191.4 1159 25.4
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 5.1e-46 191.0 1143 26.0
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 8.7e-46 190.3 647 29.1
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 1.8e-43 182.6 1124 25.0
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 4.5e-42 177.9 1141 25.3
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 5.8e-42 177.6 1063 25.2
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.3e-41 176.4 1158 24.7
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.8e-41 174.9 1143 24.5
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.4e-40 172.9 1170 24.1
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 7.1e-40 170.6 1057 25.4
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 3.3e-37 161.8 1026 25.8
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 4.3e-37 161.4 1105 25.0
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 4.3e-37 161.4 1083 23.9
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 2.4e-35 155.6 1059 25.0
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 4.5e-34 151.4 1048 25.4
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 6.4e-33 147.5 771 25.7
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 8.4e-33 147.1 1051 24.6
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 8.4e-33 147.1 1050 25.2
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.4e-32 146.4 1021 25.5
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.9e-32 146.0 1136 24.3
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 1.9e-32 146.0 1050 24.9
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 3.2e-32 145.2 1129 23.0
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 2.7e-31 142.1 1069 24.3
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 6.0e-31 141.0 981 24.4
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 5.1e-30 137.9 1121 24.0
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 9.6e-29 133.7 1043 25.0
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.3e-28 133.3 1020 24.2
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.7e-28 131.7 778 24.8
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.7e-28 131.7 1048 25.1
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.1e-27 128.6 1018 24.3
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.5e-26 126.3 414 31.4
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 2.2e-25 122.5 729 25.8
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 3.8e-25 121.7 684 24.4
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.4e-24 119.8 743 25.7
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.9e-24 119.4 1170 23.4
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 9.3e-24 117.1 1038 24.4
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 3.9e-22 111.7 1034 22.8
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.9e-22 111.7 432 29.6
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 5.1e-22 111.3 1018 24.3
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 6.7e-22 110.9 837 24.6
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 6.7e-22 110.9 1017 24.2
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.1e-21 110.2 1055 22.7
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 3.3e-21 108.6 1054 23.6
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 6.3e-20 104.4 1046 24.1
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.1e-19 103.6 632 23.4
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.1e-19 103.6 632 23.4
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 6.9e-19 100.9 681 24.4
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 1.2e-18 100.1 840 23.7
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.5e-18 99.8 240 36.2
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 2.0e-18 99.4 1164 22.7
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 7.7e-18 97.4 1022 23.4
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 2.2e-17 95.9 235 33.2
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 2.9e-17 95.5 215 34.0
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.8e-17 95.1 1190 22.1
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 8.5e-17 94.0 332 30.1
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.9e-16 92.8 584 23.6
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.2e-15 90.1 549 24.8
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.6e-15 89.7 1186 21.2
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 6.1e-15 87.8 821 22.2
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 2.3e-14 85.9 666 22.7
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 2.0e-13 82.8 421 24.9
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.5e-13 82.4 581 25.0
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 7.4e-13 80.9 1069 22.4
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.7e-12 79.7 1075 22.0
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 1.7e-12 79.7 959 22.5
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 8.2e-12 77.4 590 24.6
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.8e-11 76.3 446 24.9
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 2.4e-11 75.9 219 31.5
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 4.1e-11 75.1 453 26.0
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.9e-11 74.3 498 23.1
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 2.6e-10 72.4 418 25.1
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 4.5e-10 71.6 238 29.4
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 7.7e-10 70.9 84 45.2
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.3e-09 70.1 418 24.9
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.3e-09 70.1 211 29.4
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 6.5e-09 67.8 127 37.0
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 6.5e-09 67.8 127 37.0
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 8.5e-09 67.4 678 22.6
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 8.5e-09 67.4 109 39.4
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 8.5e-09 67.4 453 25.2
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 1.1e-08 67.0 177 32.2
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 1.1e-08 67.0 177 32.2
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.1e-08 67.0 177 32.2
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.9e-08 66.2 125 36.8
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 2.5e-08 65.9 559 24.9
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 3.2e-08 65.5 74 45.9
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 3.2e-08 65.5 74 45.9
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 3.2e-08 65.5 166 32.5
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 7.2e-08 64.3 214 28.5
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 1.6e-07 63.2 208 29.8
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 1.6e-07 63.2 165 33.3
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 2.1e-07 62.8 217 29.0
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 2.1e-07 62.8 217 29.0
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 2.7e-07 62.4 219 28.3
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 2.7e-07 62.4 274 28.5
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 3.6e-07 62.0 214 29.0
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 3.6e-07 62.0 206 28.6
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 3.6e-07 62.0 206 28.6
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 4.7e-07 61.6 124 37.1
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 1.0e-06 60.5 254 29.1
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 1.0e-06 60.5 217 29.0
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.0e-06 60.5 204 28.4
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 1.4e-06 60.1 205 26.3
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.8e-06 59.7 206 28.6
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.8e-06 59.7 61 50.8
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.3e-06 59.3 238 27.3
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 2.3e-06 59.3 214 29.0
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 2.3e-06 59.3 482 22.6
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.0e-06 58.9 77 44.2
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.0e-06 58.9 61 49.2
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 3.9e-06 58.5 305 24.6


User provided reference genes

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