Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1785.4 916 100.0
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1278.1 914 72.9
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1253.4 918 70.9
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1249.2 911 71.2
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1239.6 912 70.2
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1234.6 917 70.2
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1234.2 914 70.9
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1223.4 914 70.0
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1223.4 912 70.3
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1219.1 989 66.1
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1218.0 907 70.3
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1216.1 917 70.1
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1211.8 904 69.9
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1207.6 914 69.5
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1207.2 912 68.5
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1206.8 952 66.0
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1206.8 925 68.2
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1203.0 914 69.1
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1202.6 913 68.5
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1200.3 914 68.6
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1199.1 912 68.8
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1198.7 914 69.3
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1196.4 916 68.0
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1196.0 921 68.4
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1194.9 912 68.2
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1194.5 928 68.2
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1194.5 914 68.6
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1191.8 914 67.3
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1191.0 913 68.2
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1182.9 921 67.6
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1181.4 916 66.2
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1180.2 928 68.1
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1178.3 925 67.4
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1173.7 913 66.6
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1169.1 849 71.5
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1161.0 913 65.7
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1154.8 871 68.8
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1153.3 912 65.9
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1150.2 1070 60.0
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1142.9 912 66.7
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1142.1 904 65.9
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1140.6 909 65.6
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1130.5 904 65.2
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1128.2 863 67.7
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1127.9 1078 58.6
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1119.4 914 63.7
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1111.7 928 65.0
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1109.7 959 61.6
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1109.4 912 63.8
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1109.0 932 63.4
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1099.7 897 64.8
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1090.1 901 63.9
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1083.2 920 61.8
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1083.2 915 63.0
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1080.1 914 62.4
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1078.5 914 61.7
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1076.6 916 63.0
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1075.8 920 61.5
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 2.5e-311 1072.0 913 62.0
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 5.6e-311 1070.8 911 62.1
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 1.3e-310 1069.7 870 64.7
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 1.6e-310 1069.3 920 61.1
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 5.2e-309 1064.3 768 72.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 6.4e-307 1057.4 914 61.3
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 7.1e-306 1053.9 918 62.0
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 4.6e-305 1051.2 904 63.2
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 1.5e-303 1046.2 913 61.3
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 2.1e-302 1042.3 923 60.5
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 2.1e-302 1042.3 983 57.8
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 2.6e-300 1035.4 915 60.2
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 3.0e-296 1021.9 914 59.7
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 1.1e-293 1013.4 915 59.2
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.8e-293 1012.7 926 60.7
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.7e-291 1006.1 871 62.2
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 4.9e-291 1004.6 907 60.5
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 8.4e-291 1003.8 943 57.8
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 4.2e-290 1001.5 725 73.0
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 4.3e-287 991.5 913 58.2
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 3.4e-284 981.9 930 57.2
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 4.2e-282 974.9 914 58.4
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 4.2e-282 974.9 759 66.5
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.3e-280 969.1 862 61.0
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.8e-278 962.2 910 59.1
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 3.4e-276 955.3 1007 53.7
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.0e-275 953.7 1138 49.2
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.4e-269 933.3 723 69.0
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 9.4e-266 920.6 946 53.8
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 2.7e-265 919.1 888 56.0
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 4.4e-255 885.2 923 54.3
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 2.6e-247 859.4 909 52.9
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 6.3e-246 854.7 634 72.6
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 6.1e-241 838.2 641 66.9
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.7e-236 822.8 726 59.8
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 7.7e-236 821.2 773 57.7
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 7.2e-226 788.1 599 67.8
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 3.9e-203 712.6 570 64.0
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 8.1e-201 704.9 511 74.0
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 6.0e-196 688.7 565 65.3
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 7.3e-178 628.6 485 66.4
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.1e-168 598.2 422 73.5
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 9.0e-168 595.1 918 41.0
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-159 567.8 534 59.0
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 9.7e-154 548.5 435 67.4
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.8e-150 536.6 464 65.1
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 4.6e-148 529.6 898 40.4
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 3.0e-139 500.4 921 37.5
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.3e-137 495.0 891 36.8
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 1.8e-136 491.1 410 61.5
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 4.7e-132 476.5 608 48.0
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 3.0e-131 473.8 922 35.4
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 7.5e-122 442.6 298 77.2
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.0e-115 422.2 633 41.5
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 3.5e-103 380.6 348 57.5
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-95 354.4 565 40.7
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.9e-93 348.2 237 77.6
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 9.8e-90 335.9 679 36.2
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.4e-88 332.0 267 64.4
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 5.4e-88 330.1 228 75.0
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 7.3e-77 293.1 285 60.7
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.9e-69 268.5 212 69.3
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 3.5e-63 247.7 477 39.0
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 4.3e-61 240.7 260 51.5
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 2.0e-50 205.3 150 70.0
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 7.6e-50 203.4 151 67.5
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.3e-46 192.6 125 78.4
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 5.1e-38 164.1 157 53.5
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.6e-34 151.8 97 77.3
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 3.8e-33 147.9 131 55.0
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 9.4e-32 143.3 132 54.5
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.0e-29 135.6 181 42.0
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 2.0e-29 135.6 270 36.3
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.6e-29 135.2 146 56.8
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 3.7e-28 131.3 192 42.7
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.7e-23 114.4 124 51.6
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 8.8e-22 110.2 74 63.5
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.3e-20 104.0 105 57.1
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 2.6e-18 98.6 109 56.0
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 7.7e-18 97.1 81 66.7
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 8.5e-17 93.6 99 57.6
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 7.2e-16 90.5 153 37.3
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 2.2e-12 79.0 58 58.6
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 2.4e-11 75.5 986 20.2
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 5.3e-11 74.3 129 40.3
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 3.5e-10 71.6 69 55.1
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 5.9e-10 70.9 129 38.0
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 2.2e-09 68.9 66 60.6
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.9e-08 65.9 67 50.7
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 4.2e-08 64.7 77 42.9
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 5.5e-08 64.3 233 27.0
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.6e-07 62.8 114 36.8
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 8.8e-06 57.0 77 39.0


User provided reference genes

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