Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 8.9e-57 223.4 115 100.0
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 2.5e-19 99.0 92 55.4
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.6e-18 96.3 90 61.1
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 2.2e-18 95.9 98 54.1
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.8e-18 94.7 91 61.5
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 6.3e-18 94.4 91 61.5
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.2e-18 94.0 102 52.9
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 8.2e-18 94.0 74 67.6
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.8e-17 92.8 92 57.6
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.4e-17 92.4 95 54.7
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.4e-17 92.4 91 56.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 3.1e-17 92.0 90 55.6
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.1e-17 92.0 92 57.6
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.1e-17 92.0 91 57.1
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 5.3e-17 91.3 91 56.0
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 6.9e-17 90.9 92 59.8
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.9e-17 90.9 91 58.2
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 9.0e-17 90.5 90 54.4
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.2e-16 90.1 98 51.0
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-16 90.1 90 55.6
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.5e-16 89.7 92 55.4
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-16 89.0 91 57.1
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 2.6e-16 89.0 95 56.8
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 2.6e-16 89.0 91 54.9
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.4e-16 88.6 89 58.4
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.4e-16 88.6 94 52.1
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 7.7e-16 87.4 91 54.9
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.7e-16 87.4 92 55.4
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 1.3e-15 86.7 93 53.8
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.7e-15 86.3 92 54.3
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.7e-15 86.3 91 56.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.2e-15 85.9 92 57.6
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.9e-15 85.5 92 58.7
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 3.8e-15 85.1 90 54.4
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 5.0e-15 84.7 93 51.6
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 5.0e-15 84.7 93 52.7
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 6.5e-15 84.3 73 65.8
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 3.2e-14 82.0 83 60.2
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 7.2e-14 80.9 96 53.1
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 9.4e-14 80.5 89 46.1
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 9.4e-14 80.5 90 48.9
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.2e-13 80.1 111 46.8
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.2e-13 80.1 96 50.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.7e-13 79.0 73 61.6
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.9e-13 77.4 89 50.6
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-12 77.0 99 45.5
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.4e-12 76.6 76 59.2
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.3e-12 75.9 98 43.9
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 3.0e-12 75.5 82 54.9
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 3.0e-12 75.5 99 45.5
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.0e-12 75.5 99 45.5
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.0e-12 75.5 94 50.0
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.0e-12 75.5 89 49.4
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 3.9e-12 75.1 89 49.4
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 3.9e-12 75.1 98 51.0
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 3.9e-12 75.1 76 57.9
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 3.9e-12 75.1 94 50.0
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 8.8e-12 73.9 96 51.0
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 8.8e-12 73.9 72 56.9
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.8e-12 73.9 98 44.9
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 8.8e-12 73.9 95 44.2
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 8.8e-12 73.9 94 52.1
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.1e-11 73.6 68 61.8
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 1.1e-11 73.6 88 46.6
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.0e-11 72.8 68 60.3
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 2.0e-11 72.8 95 44.2
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.0e-11 72.8 94 46.8
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 2.0e-11 72.8 108 47.2
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 4.3e-11 71.6 90 46.7
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.2e-10 69.3 90 46.7
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.2e-10 69.3 67 56.7
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.8e-10 68.9 91 47.3
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.7e-10 68.6 102 47.1
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 3.7e-10 68.6 99 43.4
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.3e-10 67.8 99 43.4
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 8.2e-10 67.4 92 46.7
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.1e-09 67.0 72 56.9
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.4e-09 66.6 67 55.2
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.4e-09 66.6 111 44.1
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.4e-09 65.9 99 46.5
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.1e-09 65.1 73 53.4
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 5.3e-09 64.7 97 45.4
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 9.1e-09 63.9 68 60.3
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 9.1e-09 63.9 98 44.9
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-08 63.5 99 43.4
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.2e-08 63.5 64 56.2
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.0e-08 62.8 70 52.9
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.6e-08 62.4 70 55.7
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 3.4e-08 62.0 71 52.1
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.4e-08 62.0 71 52.1
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 3.4e-08 62.0 71 52.1
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 3.4e-08 62.0 71 52.1
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.4e-08 62.0 71 52.1
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 3.4e-08 62.0 45 66.7
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 3.4e-08 62.0 82 50.0
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 4.5e-08 61.6 66 53.0
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 4.5e-08 61.6 99 42.4
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 5.9e-08 61.2 41 73.2
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.0e-07 60.5 92 43.5
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-07 60.1 71 50.7
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.3e-07 60.1 71 50.7
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.3e-07 60.1 75 50.7
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.3e-07 60.1 76 47.4
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.3e-07 60.1 99 42.4
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.3e-07 60.1 64 54.7
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-07 59.7 91 44.0
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.7e-07 59.7 74 50.0
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-07 59.3 91 45.1
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-07 59.3 91 45.1
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 91 45.1
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 2.2e-07 59.3 82 42.7
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 2.9e-07 58.9 92 44.6
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 2.9e-07 58.9 94 43.6
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.8e-07 58.5 51 56.9
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 5.0e-07 58.2 102 36.3
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 5.0e-07 58.2 98 41.8
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 5.0e-07 58.2 71 50.7
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 5.0e-07 58.2 64 53.1
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 6.5e-07 57.8 101 37.6
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 6.5e-07 57.8 94 40.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 8.5e-07 57.4 91 45.1
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 8.5e-07 57.4 101 37.6
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 8.5e-07 57.4 91 41.8
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 64 54.7
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 71 47.9
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 71 47.9
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.1e-06 57.0 71 47.9
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.1e-06 57.0 103 36.9
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 45 60.0
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-06 57.0 45 60.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-06 56.6 45 60.0
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.4e-06 56.6 101 40.6
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.9e-06 56.2 65 47.7
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.5e-06 55.8 64 53.1
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-06 55.8 91 44.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.5e-06 55.8 86 45.3
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.5e-06 55.8 76 43.4
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.5e-06 55.8 46 58.7
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.5e-06 55.8 102 41.2
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-06 55.5 89 40.4
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 4.2e-06 55.1 64 53.1
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 5.5e-06 54.7 101 36.6
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 5.5e-06 54.7 44 68.2
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 5.5e-06 54.7 44 63.6
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.2e-06 54.3 86 40.7
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 9.4e-06 53.9 64 50.0


User provided reference genes

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