Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.4e-90 336.3 168 100.0
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.2e-80 302.4 163 89.6
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 8.4e-80 300.4 168 88.7
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 7.1e-79 297.4 170 87.1
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-78 296.6 168 88.1
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 3.5e-78 295.0 168 85.7
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 7.9e-78 293.9 168 86.9
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 7.9e-78 293.9 168 86.3
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.9e-78 293.9 168 86.9
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 7.9e-78 293.9 168 88.1
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.0e-77 293.5 170 85.3
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.3e-77 293.1 170 85.3
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 1.3e-77 293.1 170 85.3
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.3e-77 293.1 170 85.3
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.8e-77 292.7 168 87.5
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 3.0e-77 292.0 166 88.0
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 5.1e-77 291.2 170 85.3
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.1e-77 291.2 170 84.1
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.1e-76 290.0 170 87.1
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.5e-76 289.7 166 86.1
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 2.5e-76 288.9 170 84.7
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.5e-76 288.9 171 84.8
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 3.3e-76 288.5 170 84.1
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 4.3e-76 288.1 167 85.0
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 4.3e-76 288.1 168 84.5
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 4.3e-76 288.1 169 85.2
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 7.4e-76 287.3 170 82.9
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 9.6e-76 287.0 171 83.6
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.6e-76 287.0 169 85.2
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.3e-75 286.6 166 84.9
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.6e-75 286.2 169 84.6
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-75 286.2 169 84.6
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-75 286.2 169 84.6
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.6e-75 286.2 169 84.6
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.8e-75 285.4 170 82.9
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.8e-75 285.4 170 82.9
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.8e-75 285.4 168 83.3
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.8e-75 285.4 168 83.3
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 3.7e-75 285.0 172 82.6
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 3.7e-75 285.0 170 82.9
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.7e-75 285.0 169 84.0
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.7e-75 285.0 169 84.0
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 4.8e-75 284.6 171 83.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 6.2e-75 284.3 171 83.6
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 8.1e-75 283.9 170 82.9
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 8.1e-75 283.9 170 82.4
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.1e-75 283.9 168 83.3
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 1.1e-74 283.5 164 83.5
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-74 283.5 169 84.0
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-74 283.5 171 82.5
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.1e-74 283.5 167 83.2
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.1e-74 283.5 170 81.8
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 1.4e-74 283.1 171 82.5
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-74 283.1 171 82.5
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.4e-74 283.1 171 82.5
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.8e-74 282.7 164 83.5
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.8e-74 282.7 164 85.4
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 3.1e-74 282.0 153 90.2
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.5e-73 279.6 166 84.3
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 3.4e-73 278.5 166 83.1
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 3.4e-73 278.5 168 82.1
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 4.5e-73 278.1 178 78.7
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 4.5e-73 278.1 176 80.1
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 4.5e-73 278.1 176 80.1
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 4.5e-73 278.1 170 81.8
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 7.6e-73 277.3 168 81.0
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.3e-72 276.6 168 82.1
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 2.2e-72 275.8 149 90.6
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 6.5e-72 274.2 177 78.0
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 8.4e-72 273.9 170 80.0
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.1e-71 273.5 176 78.4
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.9e-71 272.7 151 86.1
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 3.2e-71 271.9 168 79.8
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 4.2e-71 271.6 177 76.3
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 5.5e-71 271.2 170 79.4
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.5e-71 271.2 174 77.6
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 7.1e-71 270.8 151 86.1
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.6e-70 269.6 168 79.2
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 2.1e-70 269.2 172 79.7
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.7e-70 268.9 172 78.5
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.6e-70 268.1 176 75.6
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 6.0e-70 267.7 168 79.8
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 6.0e-70 267.7 178 75.3
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 6.0e-70 267.7 170 77.6
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 7.9e-70 267.3 178 74.7
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.0e-69 266.9 166 78.9
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.0e-69 266.9 168 79.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.8e-69 266.2 169 78.1
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.8e-69 266.2 170 78.2
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.8e-69 266.2 170 78.2
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.8e-69 266.2 178 74.7
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.8e-69 266.2 165 78.8
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.3e-69 265.8 170 78.2
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.3e-69 265.8 169 79.3
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.0e-69 265.4 152 84.2
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 3.0e-69 265.4 166 80.1
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 3.0e-69 265.4 168 81.5
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 3.0e-69 265.4 168 78.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 3.9e-69 265.0 168 77.4
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 5.1e-69 264.6 174 76.4
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 6.7e-69 264.2 147 86.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 6.7e-69 264.2 171 80.7
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 8.7e-69 263.8 178 74.7
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.1e-68 263.5 172 77.9
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.5e-68 263.1 166 77.1
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.9e-68 262.7 171 76.6
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.3e-68 261.9 157 80.3
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 4.3e-68 261.5 176 73.9
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 5.7e-68 261.2 174 77.6
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 7.4e-68 260.8 174 77.0
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 9.6e-68 260.4 169 76.9
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.3e-67 260.0 172 77.3
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 3.7e-67 258.5 167 76.0
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 6.3e-67 257.7 174 76.4
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 8.2e-67 257.3 176 74.4
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 8.2e-67 257.3 176 74.4
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 8.2e-67 257.3 174 76.4
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.4e-66 256.5 167 76.6
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.8e-66 256.1 148 85.8
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 4.1e-66 255.0 152 78.3
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 6.9e-66 254.2 181 70.2
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 175 73.7
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.6e-65 252.3 153 82.4
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 3.4e-65 251.9 164 77.4
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 5.9e-65 251.1 151 80.8
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 7.6e-65 250.8 152 77.0
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 7.6e-65 250.8 152 77.6
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.0e-64 250.4 175 73.1
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.7e-64 249.6 151 78.1
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.8e-64 248.4 175 72.6
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-63 246.5 153 78.4
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.5e-63 245.7 228 58.3
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.1e-62 242.7 162 73.5
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 4.6e-62 241.5 162 72.8
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 8.7e-61 237.3 161 71.4
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 8.7e-61 237.3 138 80.4
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 3.3e-60 235.3 138 79.7
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.8e-58 229.6 145 77.2
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 5.3e-58 228.0 126 89.7
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.3e-56 223.4 170 68.2
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.8e-56 221.9 166 68.1
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.9e-55 219.5 129 82.2
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 4.3e-52 208.4 142 66.9
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-50 203.8 132 76.5
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.4e-45 186.8 106 83.0
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 5.7e-44 181.4 134 66.4
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 7.0e-42 174.5 157 59.9
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 7.0e-42 174.5 133 60.9
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 3.5e-41 172.2 134 61.2
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 2.2e-40 169.5 134 61.2
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.2e-40 169.5 154 58.4
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 9.4e-39 164.1 170 58.2
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 9.4e-39 164.1 108 78.7
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.4e-34 150.2 91 79.1
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.8e-34 149.8 88 86.4
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 5.3e-34 148.3 86 87.2
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.5e-31 140.2 120 55.0
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 3.4e-28 129.0 105 67.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.8e-27 125.9 98 66.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.4e-26 123.6 99 61.6
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 9.1e-26 120.9 170 47.6
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.1e-23 114.0 120 45.0
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.5e-23 113.6 164 40.2
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.5e-23 112.8 71 77.5
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.7e-22 109.4 140 42.9
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.7e-22 109.4 140 42.9
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 2.3e-21 106.3 55 83.6
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.0e-21 105.9 63 76.2
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 6.8e-21 104.8 68 70.6
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 1.9e-15 86.7 64 64.1
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.9e-15 86.7 96 42.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.9e-15 86.7 96 42.7
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.6e-14 83.6 95 41.1
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.7e-14 82.0 55 72.7
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 3.0e-13 79.3 62 58.1
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.7e-11 73.6 95 44.2
PRCOL_00006691 Prasinoderma coloniale HOM05D004003 ORTHO05D004595 6.2e-06 55.1 101 38.6


User provided reference genes

Program Settings