Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 0.0e+00 1204.1 614 100.0
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 3.8e-247 858.2 610 72.6
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.6e-245 852.8 636 69.2
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 2.7e-245 852.0 612 72.1
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.4e-241 839.7 609 71.1
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.4e-241 839.0 617 70.7
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.0e-240 835.9 606 72.1
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.7e-240 835.5 611 70.5
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 3.5e-240 835.1 588 72.3
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 4.5e-240 834.7 594 71.4
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 5.9e-240 834.3 618 69.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.2e-239 832.4 593 71.5
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 2.2e-239 832.4 589 72.5
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 3.8e-239 831.6 618 69.9
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.8e-239 831.6 616 68.8
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 5.0e-239 831.2 629 68.8
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.5e-239 830.9 610 70.8
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 8.5e-239 830.5 605 71.2
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.1e-238 830.1 593 71.5
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 3.2e-238 828.6 610 70.5
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.2e-238 828.6 593 71.2
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 5.5e-238 827.8 606 71.5
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 5.5e-238 827.8 617 70.7
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.2e-237 826.6 594 71.2
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 3.6e-237 825.1 615 69.4
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 3.6e-237 825.1 605 70.2
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.0e-236 823.5 620 68.4
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.0e-236 823.5 609 70.0
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.3e-236 822.4 612 69.3
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 6.8e-236 820.8 594 71.4
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 6.8e-236 820.8 617 69.7
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 8.8e-236 820.5 585 71.8
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 4.4e-235 818.1 619 69.3
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 9.8e-235 817.0 587 70.9
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.2e-234 815.8 620 68.9
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.8e-234 815.5 587 70.7
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 4.8e-234 814.7 616 69.0
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 6.3e-234 814.3 604 69.7
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 8.3e-234 813.9 585 71.1
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.3e-234 813.9 607 70.3
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 1.4e-233 813.1 604 69.5
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.4e-233 813.1 617 68.6
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 7.0e-233 810.8 588 70.9
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.2e-232 810.1 604 69.5
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.2e-232 810.1 597 69.8
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 4.5e-232 808.1 586 70.5
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 4.5e-232 808.1 588 69.9
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 5.9e-232 807.7 603 69.2
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.3e-231 806.6 603 69.7
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 2.9e-231 805.4 582 71.5
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 2.9e-231 805.4 603 69.2
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 5.0e-231 804.7 613 68.2
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 6.6e-231 804.3 603 68.8
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 3.3e-230 802.0 612 67.3
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.3e-230 802.0 617 67.7
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 9.5e-230 800.4 601 69.9
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.6e-229 799.7 613 68.0
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.1e-229 799.3 603 68.3
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.8e-229 798.9 619 67.5
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 3.6e-229 798.5 595 69.6
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 4.7e-229 798.1 619 67.5
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.0e-228 797.0 602 68.8
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 4.0e-228 795.0 608 68.8
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 4.0e-228 795.0 613 67.5
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 6.8e-228 794.3 613 67.5
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 8.9e-228 793.9 621 67.1
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.2e-227 793.5 600 68.3
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 7.5e-227 790.8 608 67.6
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 9.8e-227 790.4 604 68.0
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.7e-226 789.6 582 70.1
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.8e-226 788.9 612 67.5
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 2.8e-226 788.9 612 67.6
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 6.3e-226 787.7 612 67.5
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 4.1e-225 785.0 541 73.2
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 4.5e-224 781.6 580 69.1
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.3e-223 780.0 592 67.2
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.9e-223 778.9 594 67.2
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 9.5e-222 773.9 604 67.2
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.8e-221 772.3 583 68.6
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.1e-221 771.2 590 67.6
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 6.1e-221 771.2 576 68.4
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.0e-220 770.4 596 67.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.4e-220 770.0 611 65.5
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.1e-220 768.8 609 65.7
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 8.9e-220 767.3 611 65.6
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.2e-219 766.9 609 64.9
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.2e-219 766.9 609 64.7
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.2e-219 766.9 609 64.9
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.5e-219 766.5 581 67.8
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 3.4e-219 765.4 609 65.2
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.4e-219 765.4 597 66.5
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 7.5e-219 764.2 588 66.7
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 2.9e-218 762.3 591 66.0
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 2.9e-218 762.3 598 65.9
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 3.7e-218 761.9 629 63.8
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 6.4e-218 761.1 609 64.5
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 6.4e-218 761.1 609 64.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 8.3e-218 760.8 600 65.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.7e-215 753.1 653 62.5
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.3e-215 752.7 534 72.1
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.1e-214 750.4 601 64.7
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.3e-214 748.8 578 65.6
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.3e-214 748.4 573 67.0
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.6e-213 746.5 577 65.3
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 2.1e-213 746.1 575 66.6
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 2.8e-213 745.7 583 65.9
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-212 743.8 619 63.7
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.1e-212 743.8 563 68.2
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 7.5e-211 737.6 593 65.3
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.2e-210 736.1 600 65.0
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 5.4e-209 731.5 587 65.2
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 5.4e-209 731.5 587 65.2
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 4.0e-204 715.3 569 64.1
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 5.2e-204 714.9 573 66.3
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 6.8e-204 714.5 579 65.8
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 8.9e-204 714.1 611 62.8
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.6e-203 712.6 568 64.1
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.3e-202 710.3 581 64.2
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.2e-201 705.7 613 62.5
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 3.2e-201 705.7 547 65.8
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 9.2e-201 704.1 522 68.2
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.7e-200 702.6 534 67.0
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 2.3e-199 699.5 616 59.9
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.1e-198 697.2 595 61.7
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 8.1e-197 691.0 545 64.8
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-196 690.3 531 66.3
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 5.2e-196 688.3 563 62.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.3e-194 683.7 478 70.9
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.9e-190 669.8 538 63.9
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.1e-188 662.5 615 57.7
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.0e-188 662.1 587 60.5
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.8e-187 658.3 568 60.7
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.3e-186 657.1 596 58.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.2e-186 656.4 553 61.3
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 6.4e-186 654.8 570 62.6
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 3.9e-183 645.6 434 74.7
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.6e-182 641.7 497 65.2
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.1e-181 639.8 612 58.5
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.5e-179 633.6 547 60.5
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.1e-177 627.5 425 73.4
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 5.4e-177 625.2 525 61.7
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-176 623.6 596 56.5
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.1e-175 618.6 429 72.3
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.2e-170 603.2 426 70.7
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 6.3e-157 558.5 470 63.4
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 6.5e-154 548.5 599 49.7
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.6e-147 526.6 393 68.2
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 3.8e-146 522.7 488 55.3
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 5.0e-138 495.7 545 52.5
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.2e-125 453.8 342 68.1
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.7e-125 453.0 476 54.6
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.0e-119 433.3 330 68.5
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 2.7e-99 367.1 239 73.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 7.1e-68 262.7 157 80.9
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 4.9e-61 240.0 145 80.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 6.1e-43 179.9 177 55.9
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.9e-42 177.2 177 53.7
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.3e-41 174.1 174 55.2
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.2e-40 171.4 174 54.6
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.1e-33 149.1 123 58.5
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 5.3e-31 140.2 97 68.0
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 5.7e-25 120.2 94 62.8
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.1e-23 114.4 94 60.6
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.9e-21 107.8 319 28.2
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.0e-18 97.8 293 29.4
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 6.7e-18 96.7 60 78.3
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.6e-17 94.7 227 31.3
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 6.3e-16 90.1 115 43.5
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 8.2e-16 89.7 131 39.7
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-14 85.5 215 31.6
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 3.2e-12 77.8 88 47.7
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.0e-10 70.9 74 56.8
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 5.2e-10 70.5 110 41.8
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.2e-09 69.3 70 57.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 9.1e-07 59.7 54 51.9
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.9e-06 57.0 74 50.0


User provided reference genes

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