Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 5.8e-197 690.6 335 100.0
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 6.9e-126 454.5 337 65.6
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 1.5e-115 420.2 326 64.4
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.9e-115 419.9 326 64.1
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 3.2e-115 419.1 321 65.7
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 4.2e-115 418.7 321 64.8
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 3.6e-114 415.6 272 71.3
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 3.3e-112 409.1 317 63.4
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 4.8e-111 405.2 358 58.9
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.1e-110 404.1 330 63.0
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.1e-110 402.1 273 68.9
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 9.1e-110 401.0 323 65.0
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.7e-109 399.4 268 69.4
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 2.7e-109 399.4 296 64.5
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 4.5e-109 398.7 318 63.2
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.0e-108 397.5 268 69.0
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 2.9e-108 396.0 275 66.2
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 2.9e-108 396.0 323 63.2
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 1.5e-107 393.7 325 61.8
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 2.5e-107 392.9 329 61.7
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 3.2e-107 392.5 382 55.2
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.2e-107 392.1 318 59.1
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 7.2e-107 391.3 271 67.5
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 1.6e-106 390.2 325 60.0
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 6.1e-106 388.3 262 69.5
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 8.0e-106 387.9 325 60.3
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.0e-106 387.9 332 59.3
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 2.3e-105 386.3 260 71.2
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 3.0e-105 386.0 323 59.8
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 4.0e-105 385.6 322 58.7
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.0e-105 385.6 320 59.7
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.0e-105 385.6 320 59.7
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.0e-105 385.6 322 61.2
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 5.2e-105 385.2 325 59.7
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 6.8e-105 384.8 330 59.1
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 8.8e-105 384.4 252 68.7
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.2e-104 384.0 317 60.6
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 2.0e-104 383.3 326 59.8
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 7.5e-104 381.3 322 60.6
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 9.8e-104 380.9 239 74.1
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 9.8e-104 380.9 283 63.6
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 1.4e-102 377.1 323 58.2
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.8e-102 376.7 278 65.5
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.4e-102 376.3 295 66.4
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.1e-102 375.9 336 56.2
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 4.1e-102 375.6 273 64.8
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.1e-102 375.6 336 56.0
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 9.1e-102 374.4 302 61.3
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.6e-101 373.6 314 63.1
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 2.7e-101 372.9 331 59.5
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 2.7e-101 372.9 300 62.7
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 4.5e-101 372.1 289 62.6
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 4.5e-101 372.1 309 60.2
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 7.7e-101 371.3 323 58.8
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.0e-100 370.9 273 64.8
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.3e-100 370.5 321 57.6
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 2.3e-100 369.8 317 58.4
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 5.0e-100 368.6 289 62.6
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 8.6e-100 367.9 322 56.8
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 1.9e-99 366.7 325 57.8
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 1.9e-99 366.7 326 57.1
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.9e-99 366.7 304 58.6
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 9.5e-99 364.4 286 62.9
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 9.5e-99 364.4 316 57.6
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.2e-98 364.0 299 59.9
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.6e-98 363.6 287 62.7
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.8e-98 362.8 321 58.9
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 3.6e-98 362.5 300 62.0
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.7e-98 362.1 287 63.1
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 1.8e-97 360.1 325 57.8
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 1.8e-97 360.1 325 57.8
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 3.0e-97 359.4 308 58.8
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 4.0e-97 359.0 327 56.3
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.2e-96 357.5 305 60.3
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 1.2e-96 357.5 321 57.0
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 2.6e-96 356.3 251 66.1
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 2.6e-96 356.3 379 51.5
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 5.7e-96 355.1 304 59.9
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 5.7e-96 355.1 248 66.9
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 9.8e-96 354.4 230 71.7
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 1.7e-95 353.6 248 66.9
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.8e-95 352.8 245 67.8
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 3.7e-95 352.4 298 60.1
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 4.9e-95 352.1 317 58.7
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 6.3e-95 351.7 314 58.3
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 6.3e-95 351.7 286 59.4
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 1.8e-94 350.1 324 54.6
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 2.4e-94 349.7 288 57.3
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 7.0e-94 348.2 313 58.5
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 9.2e-94 347.8 321 56.7
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 9.2e-94 347.8 251 64.9
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.6e-93 347.1 370 51.4
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 2.7e-93 346.3 273 61.2
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 3.5e-93 345.9 249 65.9
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 4.5e-93 345.5 242 68.2
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 4.5e-93 345.5 251 64.5
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 5.9e-93 345.1 229 69.0
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 7.8e-93 344.7 316 54.7
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.7e-92 343.6 247 64.4
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 6.6e-92 341.7 250 64.4
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 1.5e-91 340.5 196 81.1
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 1.9e-91 340.1 354 53.1
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 4.7e-90 335.5 329 54.1
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.0e-89 334.3 321 54.8
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.4e-89 334.0 274 59.1
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.4e-89 334.0 289 60.2
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.3e-89 333.2 254 62.6
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 1.5e-88 330.5 336 51.8
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.4e-88 329.3 324 53.7
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 4.6e-85 318.9 274 57.3
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 8.6e-84 314.7 323 51.4
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.4e-81 307.4 247 58.7
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 4.0e-81 305.8 226 64.2
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 8.3e-79 298.1 361 46.3
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.7e-77 293.1 226 64.2
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 1.9e-75 287.0 254 53.1
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 6.8e-73 278.5 254 54.3
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 7.5e-72 275.0 190 70.0
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.3e-71 274.2 282 51.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 1.6e-69 267.3 321 47.0
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 4.6e-69 265.8 238 55.0
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.5e-67 260.8 286 47.2
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.7e-66 255.8 217 56.7
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 6.4e-63 245.4 235 49.8
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 6.4e-63 245.4 235 49.8
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.4e-62 244.2 164 69.5
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.6e-61 240.7 211 55.5
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 1.1e-59 234.6 198 60.6
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 5.6e-59 232.3 163 64.4
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 9.6e-59 231.5 213 57.3
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 4.7e-58 229.2 245 44.9
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.1e-51 208.0 146 65.8
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.6e-50 204.1 161 62.1
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 9.0e-49 198.4 193 52.3
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-47 194.5 214 48.6
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 2.9e-47 193.4 165 58.2
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 2.9e-47 193.4 258 39.5
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.8e-41 174.1 116 67.2
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 4.9e-39 166.0 162 58.6
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 5.5e-38 162.5 201 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.6e-37 161.0 130 60.0
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 2.1e-37 160.6 291 37.8
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 6.9e-33 145.6 147 52.4
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 7.1e-30 135.6 107 57.0
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.5e-27 127.9 166 48.8
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 4.8e-26 122.9 141 51.1
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.6e-21 107.8 76 64.5
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.5e-19 101.3 72 65.3
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.9e-19 100.9 136 41.9
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.9e-19 100.9 90 53.3
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 1.1e-17 95.1 106 45.3
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.3e-17 92.8 76 53.9
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.9e-16 89.4 122 45.1
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 1.3e-15 88.2 77 63.6
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 1.2e-08 65.1 187 28.3
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.7e-07 61.2 36 72.2


User provided reference genes

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