Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.1e-78 296.6 153 100.0
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.2e-21 107.1 162 45.1
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 2.1e-21 106.3 147 46.9
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 4.7e-21 105.1 150 42.0
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 4.7e-21 105.1 150 42.0
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.1e-20 104.0 164 42.1
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 4.0e-20 102.1 162 43.2
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 5.2e-20 101.7 164 40.2
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 6.8e-20 101.3 156 42.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 6.8e-20 101.3 167 41.9
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 6.8e-20 101.3 154 40.9
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.5e-19 100.1 165 39.4
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 3.4e-19 99.0 141 46.1
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 5.8e-19 98.2 138 41.3
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 2.2e-18 96.3 168 40.5
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 2.9e-18 95.9 145 40.7
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.4e-18 94.7 139 41.7
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.4e-18 94.7 139 41.7
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 8.3e-18 94.4 160 41.9
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.4e-17 93.6 152 42.8
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.9e-17 93.2 148 39.9
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.9e-17 93.2 148 39.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.9e-17 93.2 156 38.5
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.9e-17 93.2 140 43.6
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-17 93.2 143 38.5
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.9e-17 93.2 148 39.9
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 2.4e-17 92.8 137 41.6
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 3.2e-17 92.4 147 43.5
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 4.1e-17 92.0 157 39.5
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 5.4e-17 91.7 169 36.7
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 7.1e-17 91.3 165 42.4
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 9.2e-17 90.9 146 44.5
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.2e-16 90.5 152 42.8
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.2e-16 90.5 152 38.2
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 1.6e-16 90.1 150 38.0
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.7e-16 89.4 169 39.6
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.7e-16 89.4 169 39.6
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 3.5e-16 89.0 142 41.5
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 4.6e-16 88.6 171 41.5
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 6.0e-16 88.2 175 41.7
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.0e-15 87.4 145 41.4
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.0e-15 87.4 143 37.8
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.0e-15 87.4 143 37.8
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.0e-15 87.4 150 40.0
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.3e-15 87.0 139 43.9
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.3e-15 87.0 147 41.5
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.3e-15 87.0 155 40.0
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.7e-15 86.7 144 41.0
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 2.3e-15 86.3 171 38.0
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 3.0e-15 85.9 148 37.2
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 3.9e-15 85.5 148 41.2
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.9e-15 85.5 168 35.1
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 5.1e-15 85.1 150 39.3
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 6.6e-15 84.7 153 39.2
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 8.6e-15 84.3 178 38.8
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.9e-14 83.2 137 39.4
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.9e-14 83.2 156 39.1
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.9e-14 83.2 156 39.1
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 2.5e-14 82.8 162 37.0
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.5e-14 82.8 143 37.8
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 4.3e-14 82.0 157 38.2
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 4.3e-14 82.0 174 37.4
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 5.6e-14 81.6 137 41.6
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 5.6e-14 81.6 154 39.6
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 7.3e-14 81.3 160 36.2
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 7.3e-14 81.3 174 39.1
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 7.3e-14 81.3 187 34.2
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 7.3e-14 81.3 172 36.6
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 7.3e-14 81.3 186 37.1
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.2e-13 80.5 169 39.6
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.1e-13 79.7 157 36.3
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.8e-13 79.3 167 37.1
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 3.6e-13 79.0 165 38.2
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 4.7e-13 78.6 153 37.3
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 4.7e-13 78.6 177 35.0
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 6.2e-13 78.2 166 40.4
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 8.1e-13 77.8 145 39.3
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.1e-12 77.4 155 36.8
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 4.0e-12 75.5 145 39.3
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 6.8e-12 74.7 147 38.1
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 6.8e-12 74.7 153 37.9
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 8.9e-12 74.3 139 40.3
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.2e-11 73.9 159 38.4
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.5e-11 73.6 166 36.7
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.5e-11 73.6 181 34.3
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 2.6e-11 72.8 163 36.2
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.6e-11 72.8 145 37.2
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 3.4e-11 72.4 168 34.5
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 4.4e-11 72.0 170 34.7
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 5.8e-11 71.6 138 37.7
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 7.6e-11 71.2 159 33.3
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 7.6e-11 71.2 153 36.6
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.3e-10 70.5 138 37.0
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.3e-10 70.5 138 37.0
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.7e-10 70.1 170 34.1
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 2.2e-10 69.7 188 33.0
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 2.2e-10 69.7 188 33.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 2.2e-10 69.7 99 42.4
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 2.9e-10 69.3 159 33.3
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 2.9e-10 69.3 165 33.9
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.8e-10 68.9 151 34.4
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 4.9e-10 68.6 182 31.9
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 6.4e-10 68.2 170 32.9
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.4e-10 68.2 148 37.2
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 6.4e-10 68.2 72 54.2
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 6.4e-10 68.2 145 38.6
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 8.4e-10 67.8 168 33.3
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 8.4e-10 67.8 177 31.6
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.1e-09 67.4 169 34.3
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.4e-09 67.0 168 32.7
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.9e-09 66.6 139 40.3
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.9e-09 66.6 78 46.2
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.9e-09 66.6 159 38.4
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.9e-09 66.6 179 34.1
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.4e-09 66.2 70 48.6
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 1.2e-08 63.9 107 38.3
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.6e-08 63.5 140 35.7
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.0e-07 60.8 156 31.4
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 1.3e-07 60.5 153 30.7
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.0e-07 59.3 149 36.2
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 3.0e-07 59.3 165 32.7
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 3.9e-07 58.9 129 35.7
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 6.6e-07 58.2 45 62.2
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 8.6e-07 57.8 139 36.0
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.3e-06 55.8 39 64.1
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 3.3e-06 55.8 160 32.5
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 3.3e-06 55.8 35 71.4
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 5.6e-06 55.1 102 39.2
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.6e-06 54.3 91 40.7
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 9.6e-06 54.3 68 50.0


User provided reference genes

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