Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 4.4e-141 504.6 251 100.0
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.2e-93 347.1 240 70.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 2.1e-90 336.3 249 66.3
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.6e-90 335.1 249 67.9
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.3e-89 333.6 249 67.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.7e-89 333.2 240 67.5
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 2.3e-89 332.8 247 68.0
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 3.0e-89 332.4 250 67.6
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.5e-88 329.3 255 66.7
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 4.3e-88 328.6 249 66.3
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 7.3e-88 327.8 249 66.7
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.3e-87 327.0 248 68.5
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 8.1e-87 324.3 251 65.3
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.4e-86 323.6 251 63.7
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.8e-86 323.2 250 65.6
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 3.1e-86 322.4 251 67.7
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 4.0e-86 322.0 248 65.3
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.5e-85 320.1 248 64.9
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.6e-85 319.3 251 64.5
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.7e-84 316.6 251 63.7
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.2e-84 316.2 247 64.0
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.9e-84 315.1 247 64.8
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.9e-84 315.1 260 63.1
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.4e-84 314.7 247 64.4
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 8.4e-84 314.3 251 63.7
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 8.4e-84 314.3 251 63.7
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 8.4e-84 314.3 246 63.8
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.3e-83 310.8 254 65.0
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.6e-82 310.1 250 63.2
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 3.5e-82 308.9 260 62.7
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 4.6e-82 308.5 247 64.0
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 4.6e-82 308.5 249 63.9
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 7.9e-82 307.8 247 61.5
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.3e-81 307.0 251 62.9
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 2.3e-81 306.2 250 62.8
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.3e-81 306.2 260 63.1
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 3.9e-81 305.4 249 62.7
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 6.7e-81 304.7 224 69.2
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 8.7e-81 304.3 247 63.6
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 8.7e-81 304.3 261 63.2
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 8.7e-81 304.3 259 61.0
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 1.1e-80 303.9 224 69.2
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.1e-80 303.9 248 61.7
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.1e-80 303.9 248 61.7
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.1e-80 303.9 259 60.6
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-80 303.5 251 61.0
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-80 303.5 252 61.1
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.5e-80 303.5 245 64.9
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 2.5e-80 302.8 249 62.2
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 9.6e-80 300.8 248 58.5
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-79 300.1 254 59.4
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.6e-79 300.1 253 61.7
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.1e-79 299.7 250 63.6
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 2.8e-79 299.3 240 62.5
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.8e-79 299.3 249 61.0
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 3.7e-79 298.9 242 62.4
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 4.8e-79 298.5 244 64.3
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 3.1e-78 295.8 186 76.3
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 4.0e-78 295.4 254 59.8
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 4.0e-78 295.4 254 59.8
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.0e-78 295.4 202 68.8
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 5.3e-78 295.0 242 60.7
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 6.9e-78 294.7 277 56.7
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.5e-77 293.5 241 62.2
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.5e-77 293.5 257 58.4
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 1.5e-77 293.5 252 59.9
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.0e-77 293.1 252 59.5
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 2.6e-77 292.7 245 60.8
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 4.5e-77 292.0 253 58.5
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.8e-77 291.6 185 73.0
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 7.6e-77 291.2 244 60.2
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-76 290.8 257 58.0
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.3e-76 290.4 186 72.6
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.7e-76 290.0 249 59.4
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.7e-76 290.0 243 62.1
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 2.2e-76 289.7 239 61.1
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.9e-76 289.3 189 73.5
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 4.9e-76 288.5 244 62.3
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 6.5e-76 288.1 241 60.2
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.5e-76 288.1 240 57.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 6.5e-76 288.1 240 57.9
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 8.4e-76 287.7 250 58.8
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 8.4e-76 287.7 185 73.0
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.4e-75 287.0 189 71.4
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.4e-75 287.0 258 58.1
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 3.2e-75 285.8 241 59.8
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.2e-75 285.4 186 72.0
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.5e-75 285.0 188 71.3
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.5e-74 282.3 185 73.5
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.8e-73 280.0 268 57.1
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.3e-73 279.6 244 60.7
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.9e-73 278.9 226 63.3
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 3.9e-73 278.9 240 59.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 6.7e-73 278.1 243 57.6
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.5e-72 276.2 189 67.2
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 7.4e-72 274.6 241 59.3
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 7.4e-72 274.6 243 56.4
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.6e-71 273.5 186 69.9
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.6e-71 273.5 252 57.9
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.1e-71 273.1 240 57.1
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 8.2e-71 271.2 218 64.7
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.1e-70 270.8 257 57.2
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.4e-70 270.4 245 58.4
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.8e-70 270.0 189 68.3
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.8e-70 270.0 183 69.9
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 9.0e-70 267.7 238 56.3
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.5e-69 266.9 186 68.3
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 2.0e-69 266.5 244 55.7
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 2.6e-69 266.2 242 55.8
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 3.4e-69 265.8 238 55.0
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 7.6e-69 264.6 267 54.3
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.6e-69 264.6 239 56.9
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.0e-68 264.2 267 53.9
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.2e-68 263.1 190 66.3
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 2.2e-68 263.1 224 62.1
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 6.5e-68 261.5 263 53.6
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.5e-67 259.6 254 53.9
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 2.1e-66 256.5 242 54.5
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.0e-65 254.2 185 67.0
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.9e-64 250.0 242 51.7
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 5.7e-64 248.4 178 66.9
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 2.2e-63 246.5 181 63.5
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 3.7e-63 245.7 244 53.7
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 8.2e-63 244.6 178 65.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.1e-62 244.2 159 72.3
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 1.1e-62 244.2 237 52.7
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 1.4e-62 243.8 190 60.5
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.4e-62 243.0 188 62.8
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.4e-62 243.0 266 50.8
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 6.9e-62 241.5 184 61.4
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 6.9e-62 241.5 184 61.4
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 9.0e-62 241.1 184 61.4
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.5e-61 240.4 330 42.4
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 7.7e-61 238.0 162 67.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 3.8e-60 235.7 237 52.3
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 4.2e-59 232.3 176 60.2
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.1e-58 229.9 173 63.6
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.4e-57 227.3 230 54.3
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 3.9e-57 225.7 198 57.6
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 2.5e-56 223.0 200 57.5
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.3e-55 218.4 140 72.9
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 7.7e-53 211.5 224 50.9
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 7.7e-53 211.5 224 50.9
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.5e-52 208.0 138 71.0
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.2e-51 204.9 128 74.2
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.7e-50 202.2 150 63.3
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.8e-49 200.3 127 68.5
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.8e-49 200.3 171 60.2
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.1e-42 176.8 125 69.6
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 4.8e-39 165.6 188 46.8
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 4.1e-30 136.0 223 39.0
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 6.5e-28 128.6 116 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.3e-20 104.4 101 52.5
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.5e-19 100.9 75 64.0
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 7.3e-19 98.6 162 43.8
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 2.8e-18 96.7 111 52.3
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.0e-16 90.5 60 71.7
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 4.9e-15 85.9 190 31.1
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 2.3e-12 77.0 48 64.6
TWI15G0174 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.1e-06 58.2 63 54.0


User provided reference genes

Program Settings