Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1521 Punica granatum HOM05D007598 ORTHO05D009632 2.4e-38 161.8 87 100.0
THA.LOC104820651 Tarenaya hassleriana HOM05D007598 ORTHO05D009632 2.5e-19 98.6 77 68.8
BcaB06g28784 Brassica carinata HOM05D007598 ORTHO05D009632 4.3e-19 97.8 80 66.2
Carub.0004s1626 Capsella rubella HOM05D007598 ORTHO05D009632 5.6e-19 97.4 83 65.1
Potri.011G084300 Populus trichocarpa HOM05D007598 ORTHO05D009632 5.6e-19 97.4 58 84.5
QL05p057697 Quercus lobata HOM05D007598 ORTHO05D009632 7.3e-19 97.1 61 85.2
Manes.17G070801 Manihot esculenta HOM05D007598 ORTHO05D009632 9.5e-19 96.7 86 62.8
Thecc.06G149600 Theobroma cacao HOM05D007598 ORTHO05D009632 9.5e-19 96.7 81 67.9
A04p26490 Brassica napus HOM05D007598 ORTHO05D009632 1.2e-18 96.3 81 64.2
C04p63910 Brassica napus HOM05D007598 ORTHO05D009632 1.2e-18 96.3 81 64.2
BolC4t27858H Brassica oleracea HOM05D007598 ORTHO05D009632 1.2e-18 96.3 81 64.2
BraA04t18153Z Brassica rapa HOM05D007598 ORTHO05D009632 1.2e-18 96.3 81 64.2
Sp4g16850 Schrenkiella parvula HOM05D007598 ORTHO05D009632 1.2e-18 96.3 80 63.8
CANSAT35G0825 Cannabis sativa HOM05D007598 ORTHO05D009632 1.6e-18 95.9 60 81.7
CARHR128680 Cardamine hirsuta HOM05D007598 ORTHO05D009632 1.6e-18 95.9 79 64.6
Medtr2g019240 Medicago truncatula HOM05D007598 ORTHO05D009632 2.8e-18 95.1 63 71.4
AT2G34585 Arabidopsis thaliana HOM05D007598 ORTHO05D009632 4.7e-18 94.4 80 66.2
Gohir.D10G042400 Gossypium hirsutum HOM05D007598 ORTHO05D009632 4.7e-18 94.4 64 76.6
Atru.chr10.1775 Acer truncatum HOM05D007598 ORTHO05D009632 6.2e-18 94.0 81 67.9
CiPaw.10G091200 Carya illinoinensis HOM05D007598 ORTHO05D009632 1.1e-17 93.2 90 63.3
Nn3g20182 Nelumbo nucifera HOM05D007598 ORTHO05D009632 1.1e-17 93.2 59 78.0
Cpa.g.sc170.27 Carica papaya HOM05D007598 ORTHO05D009632 1.8e-17 92.4 79 68.4
AUR62030196 Chenopodium quinoa HOM05D007598 ORTHO05D009632 2.4e-17 92.0 73 60.3
Sabra11G0066800 Salix brachista HOM05D007598 ORTHO05D009632 2.4e-17 92.0 81 64.2
AL4G30560 Arabidopsis lyrata HOM05D007598 ORTHO05D009632 3.1e-17 91.7 80 65.0
AUR62002748 Chenopodium quinoa HOM05D007598 ORTHO05D009632 3.1e-17 91.7 73 60.3
Thhalv10017600m.g Eutrema salsugineum HOM05D007598 ORTHO05D009632 3.1e-17 91.7 83 61.4
Prupe.4G081500 Prunus persica HOM05D007598 ORTHO05D009632 3.1e-17 91.7 89 60.7
Aa31LG10G6810 Aethionema arabicum HOM05D007598 ORTHO05D009632 4.0e-17 91.3 80 60.0
Actinidia39580 Actinidia chinensis HOM05D007598 ORTHO05D009632 5.2e-17 90.9 80 62.5
Sopen02g019560 Solanum pennellii HOM05D007598 ORTHO05D009632 6.8e-17 90.5 82 61.0
TWI53G0871 Tripterygium wilfordii HOM05D007598 ORTHO05D009632 6.8e-17 90.5 79 64.6
Actinidia07703 Actinidia chinensis HOM05D007598 ORTHO05D009632 1.2e-16 89.7 80 63.8
DCAR_027909 Daucus carota HOM05D007598 ORTHO05D009632 1.2e-16 89.7 59 74.6
Lj6g0001552 Lotus japonicus HOM05D007598 ORTHO05D009632 1.2e-16 89.7 77 62.3
CSS0006536 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 1.5e-16 89.4 78 64.1
Cc00_g10360 Coffea canephora HOM05D007598 ORTHO05D009632 1.5e-16 89.4 78 67.9
CSS0035986 Camellia sinensis var. sinensis HOM05D007598 ORTHO05D009632 2.0e-16 89.0 78 64.1
Cfa000936 Carpinus fangiana HOM05D007598 ORTHO05D009632 2.6e-16 88.6 83 60.2
FvH4_3g05470 Fragaria vesca HOM05D007598 ORTHO05D009632 2.6e-16 88.6 85 62.4
FAN21G2813 Fragaria x ananassa HOM05D007598 ORTHO05D009632 2.6e-16 88.6 59 79.7
Lalb_Chr20g0117881 Lupinus albus HOM05D007598 ORTHO05D009632 2.6e-16 88.6 70 64.3
Nitab4.5_0000420g0040 Nicotiana tabacum HOM05D007598 ORTHO05D009632 2.6e-16 88.6 82 59.8
Phvul.006G165400 Phaseolus vulgaris HOM05D007598 ORTHO05D009632 2.6e-16 88.6 83 60.2
FAN25G0892 Fragaria x ananassa HOM05D007598 ORTHO05D009632 3.4e-16 88.2 48 89.6
PGSC0003DMG400021093 Solanum tuberosum HOM05D007598 ORTHO05D009632 3.4e-16 88.2 82 61.0
MD05G1283100 Malus domestica HOM05D007598 ORTHO05D009632 4.4e-16 87.8 86 59.3
Nitab4.5_0006887g0010 Nicotiana tabacum HOM05D007598 ORTHO05D009632 4.4e-16 87.8 55 72.7
Sed0007826 Sechium edule HOM05D007598 ORTHO05D009632 4.4e-16 87.8 74 67.6
CAN.G702.32 Capsicum annuum HOM05D007598 ORTHO05D009632 5.8e-16 87.4 63 68.3
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 5.8e-16 87.4 82 57.3
arahy.Tifrunner.gnm1.ann1.A3G0A3 Arachis hypogaea HOM05D007598 ORTHO05D009632 7.6e-16 87.0 83 62.7
Psat1g188680 Pisum sativum HOM05D007598 ORTHO05D009632 7.6e-16 87.0 85 60.0
COL.COLO4_31062 Corchorus olitorius HOM05D007598 ORTHO05D009632 1.3e-15 86.3 46 89.1
MELO3C007128.2 Cucumis melo HOM05D007598 ORTHO05D009632 1.3e-15 86.3 59 76.3
Duzib235G0096 Durio zibethinus HOM05D007598 ORTHO05D009632 1.3e-15 86.3 89 62.9
FAN16G2639 Fragaria x ananassa HOM05D007598 ORTHO05D009632 1.3e-15 86.3 80 63.8
MD10G1261400 Malus domestica HOM05D007598 ORTHO05D009632 1.3e-15 86.3 88 60.2
Rhsim02G0159000 Rhododendron simsii HOM05D007598 ORTHO05D009632 1.3e-15 86.3 84 56.0
Solyc02g070470.1 Solanum lycopersicum HOM05D007598 ORTHO05D009632 1.3e-15 86.3 83 59.0
unitig_749.g13736 Utricularia gibba HOM05D007598 ORTHO05D009632 1.3e-15 86.3 72 65.3
ClCG01G024670 Citrullus lanatus HOM05D007598 ORTHO05D009632 1.7e-15 85.9 88 60.2
Ca_00537_v3 Cicer arietinum L. HOM05D007598 ORTHO05D009632 2.2e-15 85.5 53 75.5
FAN11G3574 Fragaria x ananassa HOM05D007598 ORTHO05D009632 2.2e-15 85.5 81 64.2
HanXRQChr15g0480881 Helianthus annuus HOM05D007598 ORTHO05D009632 2.2e-15 85.5 52 76.9
HPP92_000988 Vanilla planifolia HOM05D007598 ORTHO05D009632 2.2e-15 85.5 69 65.2
arahy.Tifrunner.gnm1.ann1.KTXA2U Arachis hypogaea HOM05D007598 ORTHO05D009632 2.9e-15 85.1 83 61.4
SalBow8G5536 Salvia bowleyana HOM05D007598 ORTHO05D009632 2.9e-15 85.1 60 71.7
EL10Ac8g19673 Beta vulgaris HOM05D007598 ORTHO05D009632 3.8e-15 84.7 59 69.5
Ciclev10017916m.g Citrus clementina HOM05D007598 ORTHO05D009632 3.8e-15 84.7 70 67.1
Glyma.13G218700 Glycine max HOM05D007598 ORTHO05D009632 4.9e-15 84.3 83 59.0
Ah.14g086510 Amaranthus hybridus HOM05D007598 ORTHO05D009632 6.4e-15 84.0 48 77.1
Glyma.15G093500 Glycine max HOM05D007598 ORTHO05D009632 6.4e-15 84.0 83 60.2
MBI02_g15148_MAGBIO Magnolia biondii HOM05D007598 ORTHO05D009632 6.4e-15 84.0 59 71.2
HanXRQChr04g0114301 Helianthus annuus HOM05D007598 ORTHO05D009632 8.4e-15 83.6 81 59.3
Aqoxy7G00246 Aquilegia oxysepala HOM05D007598 ORTHO05D009632 1.1e-14 83.2 66 63.6
Rhsim13G0114100 Rhododendron simsii HOM05D007598 ORTHO05D009632 1.4e-14 82.8 73 60.3
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 1.4e-14 82.8 63 68.3
PSO541G2526 Papaver somniferum HOM05D007598 ORTHO05D009632 2.4e-14 82.0 82 53.7
CsaV3_6G051780 Cucumis sativus L. HOM05D007598 ORTHO05D009632 3.2e-14 81.6 89 58.4
Sc05g0006160 Simmondsia chinensis HOM05D007598 ORTHO05D009632 3.2e-14 81.6 48 72.9
Lsat_1_v5_gn_7_28481 Lactuca sativa HOM05D007598 ORTHO05D009632 4.2e-14 81.3 52 71.2
RcHm_v2.0_Chr5g0014281 Rosa chinensis HOM05D007598 ORTHO05D009632 4.2e-14 81.3 84 58.3
ATR1098G093 Amborella trichopoda HOM05D007598 ORTHO05D009632 7.1e-14 80.5 69 59.4
Migut.M01992 Erythranthe guttata HOM05D007598 ORTHO05D009632 1.2e-13 79.7 70 62.9
Nitab4.5_0002744g0030 Nicotiana tabacum HOM05D007598 ORTHO05D009632 1.2e-13 79.7 79 54.4
PGSC0003DMG400012092 Solanum tuberosum HOM05D007598 ORTHO05D009632 1.6e-13 79.3 51 70.6
ECA236G0778 Erigeron canadensis HOM05D007598 ORTHO05D009632 3.5e-13 78.2 46 78.3
Migut.M00903 Erythranthe guttata HOM05D007598 ORTHO05D009632 3.5e-13 78.2 79 59.5
Zm00001eb117510 Zea mays HOM05D007598 ORTHO05D009632 1.0e-12 76.6 68 58.8
Os07g0154300 Oryza sativa ssp. japonica HOM05D007598 ORTHO05D009632 6.6e-12 73.9 86 48.8
SEGI_36626 Sequoiadendron giganteum HOM05D007598 ORTHO05D009632 1.1e-11 73.2 48 66.7
Mapoly0055s0099 Marchantia polymorpha HOM05D007598 ORTHO05D009632 1.6e-10 69.3 56 57.1
Pp3c14_11250 Physcomitrium patens HOM05D007598 ORTHO05D009632 3.8e-07 58.2 82 43.9


User provided reference genes

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