Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1409 Punica granatum HOM05D003370 ORTHO05D003848 1.5e-113 412.9 218 100.0
PGR031G1087 Punica granatum HOM05D003370 ORTHO05D003848 9.3e-55 217.6 257 55.3
PGR102G0582 Punica granatum HOM05D003370 ORTHO05D003848 1.3e-51 207.2 228 58.3
PGR004G2404 Punica granatum HOM05D003370 ORTHO05D003848 8.1e-51 204.5 151 78.1
CiPaw.12G011400 Carya illinoinensis HOM05D003370 ORTHO05D003848 5.7e-28 128.6 247 42.9
MSTRG.7055 Avicennia marina HOM05D003370 ORTHO05D003848 2.4e-26 123.2 255 37.6
Rhsim04G0006000 Rhododendron simsii HOM05D003370 ORTHO05D003848 2.4e-26 123.2 251 39.4
TAR627G0521 Trochodendron aralioides HOM05D003370 ORTHO05D003848 1.7e-24 117.1 244 38.1
FAN11G3371 Fragaria x ananassa HOM05D003370 ORTHO05D003848 2.5e-23 113.2 238 39.5
Eucgr.F03185 Eucalyptus grandis HOM05D003370 ORTHO05D003848 1.2e-22 110.9 240 40.8
FvH4_3g16010 Fragaria vesca HOM05D003370 ORTHO05D003848 1.2e-22 110.9 230 39.6
Hma1.2p1_0193F.1_g084510 Hydrangea macrophylla HOM05D003370 ORTHO05D003848 1.6e-22 110.5 223 40.4
Prupe.4G143300 Prunus persica HOM05D003370 ORTHO05D003848 1.6e-22 110.5 209 40.2
FAN21G3059 Fragaria x ananassa HOM05D003370 ORTHO05D003848 6.1e-22 108.6 232 38.4
CiPaw.11G069100 Carya illinoinensis HOM05D003370 ORTHO05D003848 7.9e-22 108.2 224 41.1
Nn7g37824 Nelumbo nucifera HOM05D003370 ORTHO05D003848 1.0e-21 107.8 224 37.9
Nn7g37825 Nelumbo nucifera HOM05D003370 ORTHO05D003848 1.0e-21 107.8 224 37.9
Sed0006922 Sechium edule HOM05D003370 ORTHO05D003848 1.4e-21 107.5 243 38.7
RcHm_v2.0_Chr5g0026971 Rosa chinensis HOM05D003370 ORTHO05D003848 2.3e-21 106.7 121 50.4
Solyc07g066350.1 Solanum lycopersicum HOM05D003370 ORTHO05D003848 2.3e-21 106.7 249 36.5
Sopen07g034530 Solanum pennellii HOM05D003370 ORTHO05D003848 3.0e-21 106.3 249 36.1
FAN16G0606 Fragaria x ananassa HOM05D003370 ORTHO05D003848 5.2e-21 105.5 229 39.3
FAN25G3092 Fragaria x ananassa HOM05D003370 ORTHO05D003848 5.2e-21 105.5 117 52.1
Haze_08530 Corylus avellana HOM05D003370 ORTHO05D003848 1.1e-20 104.4 208 39.4
MD05G1215900 Malus domestica HOM05D003370 ORTHO05D003848 1.1e-20 104.4 124 49.2
Cpa.g.sc10.34 Carica papaya HOM05D003370 ORTHO05D003848 2.0e-20 103.6 202 40.1
MD10G1198500 Malus domestica HOM05D003370 ORTHO05D003848 3.3e-20 102.8 233 37.3
COL.COLO4_05068 Corchorus olitorius HOM05D003370 ORTHO05D003848 5.7e-20 102.1 147 46.3
Dinv42522 Davidia involucrata HOM05D003370 ORTHO05D003848 1.3e-19 100.9 197 42.1
QL04p074651 Quercus lobata HOM05D003370 ORTHO05D003848 2.8e-19 99.8 120 51.7
Oeu056998.1 Olea europaea HOM05D003370 ORTHO05D003848 3.7e-19 99.4 236 35.2
Oeu003838.1 Olea europaea HOM05D003370 ORTHO05D003848 6.3e-19 98.6 261 34.9
Migut.M01564 Erythranthe guttata HOM05D003370 ORTHO05D003848 8.2e-19 98.2 235 37.0
MSTRG.16116 Avicennia marina HOM05D003370 ORTHO05D003848 1.1e-18 97.8 258 37.2
CANSAT56G2341 Cannabis sativa HOM05D003370 ORTHO05D003848 1.1e-18 97.8 236 38.1
Thecc.07G155900 Theobroma cacao HOM05D003370 ORTHO05D003848 1.1e-18 97.8 228 38.2
MBI18_g28204_MAGBIO Magnolia biondii HOM05D003370 ORTHO05D003848 1.8e-18 97.1 224 39.7
Duzib187G0305 Durio zibethinus HOM05D003370 ORTHO05D003848 2.4e-18 96.7 226 38.9
Lsat_1_v5_gn_7_72140 Lactuca sativa HOM05D003370 ORTHO05D003848 2.4e-18 96.7 259 35.1
Duzib213G0602 Durio zibethinus HOM05D003370 ORTHO05D003848 5.3e-18 95.5 231 39.0
Migut.H01699 Erythranthe guttata HOM05D003370 ORTHO05D003848 5.3e-18 95.5 267 37.5
ClCG11G016320 Citrullus lanatus HOM05D003370 ORTHO05D003848 7.0e-18 95.1 257 37.0
Gohir.A01G037400 Gossypium hirsutum HOM05D003370 ORTHO05D003848 7.7e-17 91.7 232 37.9
Gohir.D01G024700 Gossypium hirsutum HOM05D003370 ORTHO05D003848 7.7e-17 91.7 232 37.9
Gorai.002G033200 Gossypium raimondii HOM05D003370 ORTHO05D003848 7.7e-17 91.7 232 37.9
Sed0028071 Sechium edule HOM05D003370 ORTHO05D003848 2.9e-16 89.7 216 38.9
Cc05_g15980 Coffea canephora HOM05D003370 ORTHO05D003848 8.5e-16 88.2 122 48.4
MBI02_g25678_MAGBIO Magnolia biondii HOM05D003370 ORTHO05D003848 8.5e-16 88.2 266 38.7
Manes.06G169800 Manihot esculenta HOM05D003370 ORTHO05D003848 1.1e-15 87.8 154 42.2
THA.LOC104815712 Tarenaya hassleriana HOM05D003370 ORTHO05D003848 1.1e-15 87.8 274 35.0
TAR629G0110 Trochodendron aralioides HOM05D003370 ORTHO05D003848 1.5e-15 87.4 256 36.3
CDE12G0640 Ceratophyllum demersum HOM05D003370 ORTHO05D003848 1.9e-15 87.0 241 34.4
ATR1098G156 Amborella trichopoda HOM05D003370 ORTHO05D003848 3.2e-15 86.3 234 35.9
THA.LOC104808115 Tarenaya hassleriana HOM05D003370 ORTHO05D003848 4.2e-15 85.9 247 34.4
Sp1g41630 Schrenkiella parvula HOM05D003370 ORTHO05D003848 7.2e-15 85.1 245 35.9
TWI38G1331 Tripterygium wilfordii HOM05D003370 ORTHO05D003848 7.2e-15 85.1 145 43.4
unitig_26.g10083 Utricularia gibba HOM05D003370 ORTHO05D003848 7.2e-15 85.1 253 35.2
CAN.G943.30 Capsicum annuum HOM05D003370 ORTHO05D003848 9.4e-15 84.7 226 36.3
CDE04G2574 Ceratophyllum demersum HOM05D003370 ORTHO05D003848 9.4e-15 84.7 246 33.3
DCAR_016819 Daucus carota HOM05D003370 ORTHO05D003848 1.2e-14 84.3 233 36.1
PGSC0003DMG400022132 Solanum tuberosum HOM05D003370 ORTHO05D003848 1.2e-14 84.3 250 32.8
AT1G56020 Arabidopsis thaliana HOM05D003370 ORTHO05D003848 1.6e-14 84.0 249 34.5
Sopen10g001580 Solanum pennellii HOM05D003370 ORTHO05D003848 1.6e-14 84.0 220 35.0
HanXRQChr13g0409331 Helianthus annuus HOM05D003370 ORTHO05D003848 4.7e-14 82.4 259 32.8
Nitab4.5_0007742g0010 Nicotiana tabacum HOM05D003370 ORTHO05D003848 6.1e-14 82.0 234 34.6
Lalb_Chr19g0133441 Lupinus albus HOM05D003370 ORTHO05D003848 8.0e-14 81.6 245 33.9
MELO3C016176.2 Cucumis melo HOM05D003370 ORTHO05D003848 1.0e-13 81.3 130 44.6
Solyc10g005610.2 Solanum lycopersicum HOM05D003370 ORTHO05D003848 1.0e-13 81.3 220 32.7
CsaV3_4G007650 Cucumis sativus L. HOM05D003370 ORTHO05D003848 1.4e-13 80.9 233 36.9
Sabra05G0080700 Salix brachista HOM05D003370 ORTHO05D003848 1.4e-13 80.9 255 33.7
PGSC0003DMG400011275 Solanum tuberosum HOM05D003370 ORTHO05D003848 1.8e-13 80.5 220 32.7
SGA_v2.0_scaffold186G40226 Striga asiatica HOM05D003370 ORTHO05D003848 1.8e-13 80.5 236 36.4
Cfa019437 Carpinus fangiana HOM05D003370 ORTHO05D003848 3.0e-13 79.7 208 35.1
DCAR_013748 Daucus carota HOM05D003370 ORTHO05D003848 3.0e-13 79.7 225 34.7
Potri.007G065200 Populus trichocarpa HOM05D003370 ORTHO05D003848 5.2e-13 79.0 216 36.1
Duzib268G0800 Durio zibethinus HOM05D003370 ORTHO05D003848 6.7e-13 78.6 205 35.1
Peaxi162Scf00232g01110 Petunia axillaris HOM05D003370 ORTHO05D003848 8.8e-13 78.2 227 33.5
Potri.005G098300 Populus trichocarpa HOM05D003370 ORTHO05D003848 8.8e-13 78.2 123 41.5
Sc03g0007900 Simmondsia chinensis HOM05D003370 ORTHO05D003848 8.8e-13 78.2 219 35.6
Aa31LG10G190 Aethionema arabicum HOM05D003370 ORTHO05D003848 1.2e-12 77.8 261 31.8
EL10Ac4g08557 Beta vulgaris HOM05D003370 ORTHO05D003848 1.5e-12 77.4 235 35.3
Nitab4.5_0001749g0060 Nicotiana tabacum HOM05D003370 ORTHO05D003848 2.0e-12 77.0 248 33.5
Sabra07G0052800 Salix brachista HOM05D003370 ORTHO05D003848 2.0e-12 77.0 253 32.0
Ciclev10020533m.g Citrus clementina HOM05D003370 ORTHO05D003848 2.6e-12 76.6 224 38.4
TWI38G1432 Tripterygium wilfordii HOM05D003370 ORTHO05D003848 7.5e-12 75.1 112 49.1
Atru.chr2.1885 Acer truncatum HOM05D003370 ORTHO05D003848 9.7e-12 74.7 227 34.8
AL1G64260 Arabidopsis lyrata HOM05D003370 ORTHO05D003848 1.3e-11 74.3 203 35.5
CARHR045750 Cardamine hirsuta HOM05D003370 ORTHO05D003848 1.3e-11 74.3 245 31.8
MSTRG.13058 Avicennia marina HOM05D003370 ORTHO05D003848 2.2e-11 73.6 257 30.7
HPP92_013988 Vanilla planifolia HOM05D003370 ORTHO05D003848 3.7e-11 72.8 245 33.9
Gohir.A13G153200 Gossypium hirsutum HOM05D003370 ORTHO05D003848 4.8e-11 72.4 197 35.5
Aa31LG4G1930 Aethionema arabicum HOM05D003370 ORTHO05D003848 6.3e-11 72.0 242 31.4
Gorai.013G178500 Gossypium raimondii HOM05D003370 ORTHO05D003848 8.2e-11 71.6 192 35.4
Gohir.D13G157800 Gossypium hirsutum HOM05D003370 ORTHO05D003848 1.4e-10 70.9 192 35.4
Gohir.D08G253000 Gossypium hirsutum HOM05D003370 ORTHO05D003848 4.1e-10 69.3 214 37.4
Gorai.004G269800 Gossypium raimondii HOM05D003370 ORTHO05D003848 4.1e-10 69.3 214 37.4
SHI21373 Sapria himalayana HOM05D003370 ORTHO05D003848 5.3e-10 68.9 159 37.7
HPP92_016667 Vanilla planifolia HOM05D003370 ORTHO05D003848 7.0e-10 68.6 142 32.4
SGA_v2.0_scaffold92G28146 Striga asiatica HOM05D003370 ORTHO05D003848 9.1e-10 68.2 119 38.7
THA.LOC104812352 Tarenaya hassleriana HOM05D003370 ORTHO05D003848 1.2e-09 67.8 223 32.3
HanXRQChr03g0078121 Helianthus annuus HOM05D003370 ORTHO05D003848 1.6e-09 67.4 214 31.8
Carub.0001s4461 Capsella rubella HOM05D003370 ORTHO05D003848 2.7e-09 66.6 204 35.3
Thhalv10021938m.g Eutrema salsugineum HOM05D003370 ORTHO05D003848 3.5e-09 66.2 210 30.5
Gohir.A08G232800 Gossypium hirsutum HOM05D003370 ORTHO05D003848 3.5e-09 66.2 211 36.0
GSVIVG01020462001 Vitis vinifera HOM05D003370 ORTHO05D003848 4.5e-09 65.9 104 45.2
Medtr2g069770 Medicago truncatula HOM05D003370 ORTHO05D003848 1.0e-08 64.7 138 37.7
Lalb_Chr03g0031581 Lupinus albus HOM05D003370 ORTHO05D003848 1.3e-08 64.3 73 52.1
Sp5g34110 Schrenkiella parvula HOM05D003370 ORTHO05D003848 1.7e-08 63.9 240 29.6
C06p10920 Brassica napus HOM05D003370 ORTHO05D003848 2.9e-08 63.2 161 38.5
BraSC56t46389Z Brassica rapa HOM05D003370 ORTHO05D003848 1.1e-07 61.2 221 31.7
CAN.G492.68 Capsicum annuum HOM05D003370 ORTHO05D003848 1.5e-07 60.8 205 33.7
TPR.G9748 Trifolium pratense HOM05D003370 ORTHO05D003848 1.5e-07 60.8 220 30.5
BcaB04g18740 Brassica carinata HOM05D003370 ORTHO05D003848 3.2e-07 59.7 208 31.2
Thhalv10012288m.g Eutrema salsugineum HOM05D003370 ORTHO05D003848 3.2e-07 59.7 213 30.5
ClCG07G010650 Citrullus lanatus HOM05D003370 ORTHO05D003848 4.2e-07 59.3 230 33.9
HanXRQChr05g0160621 Helianthus annuus HOM05D003370 ORTHO05D003848 5.5e-07 58.9 212 33.5
Aa31LG8G210 Aethionema arabicum HOM05D003370 ORTHO05D003848 7.2e-07 58.5 204 31.9
ECA240G3043 Erigeron canadensis HOM05D003370 ORTHO05D003848 9.4e-07 58.2 257 31.9
AT3G12970 Arabidopsis thaliana HOM05D003370 ORTHO05D003848 1.2e-06 57.8 210 32.4
BcaB04g18742 Brassica carinata HOM05D003370 ORTHO05D003848 1.6e-06 57.4 128 37.5
AL3G24660 Arabidopsis lyrata HOM05D003370 ORTHO05D003848 2.1e-06 57.0 210 33.3
Psat1g002640 Pisum sativum HOM05D003370 ORTHO05D003848 2.1e-06 57.0 124 33.9
AT1G79060 Arabidopsis thaliana HOM05D003370 ORTHO05D003848 3.6e-06 56.2 109 38.5
BcaB07g33177 Brassica carinata HOM05D003370 ORTHO05D003848 3.6e-06 56.2 229 31.0
Carub.0002s2593 Capsella rubella HOM05D003370 ORTHO05D003848 3.6e-06 56.2 213 31.0
CDE02G4756 Ceratophyllum demersum HOM05D003370 ORTHO05D003848 4.7e-06 55.8 155 34.8
BcaC05g29221 Brassica carinata HOM05D003370 ORTHO05D003848 6.1e-06 55.5 177 33.3
BcaC08g43669 Brassica carinata HOM05D003370 ORTHO05D003848 6.1e-06 55.5 156 36.5
C05p54950 Brassica napus HOM05D003370 ORTHO05D003848 6.1e-06 55.5 177 33.3
BolC5t34164H Brassica oleracea HOM05D003370 ORTHO05D003848 6.1e-06 55.5 177 33.3
BolC6t36173H Brassica oleracea HOM05D003370 ORTHO05D003848 6.1e-06 55.5 156 36.5
Nitab4.5_0000611g0080 Nicotiana tabacum HOM05D003370 ORTHO05D003848 8.0e-06 55.1 237 32.9
HPP92_011020 Vanilla planifolia HOM05D003370 ORTHO05D003848 8.0e-06 55.1 123 32.5


User provided reference genes

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