Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 3.8e-55 218.0 117 100.0
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 2.3e-23 112.5 93 72.0
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 2.5e-22 109.0 75 74.7
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 1.2e-21 106.7 84 69.0
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 1.4e-20 103.2 84 69.0
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 2.3e-20 102.4 72 66.7
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 3.1e-20 102.1 84 67.9
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 4.0e-20 101.7 88 67.0
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 8.9e-20 100.5 72 75.0
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 8.9e-20 100.5 86 69.8
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 2.6e-19 99.0 88 62.5
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 3.4e-19 98.6 88 65.9
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 4.4e-19 98.2 83 68.7
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 4.4e-19 98.2 71 71.8
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 4.4e-19 98.2 86 69.8
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 5.8e-19 97.8 74 71.6
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 5.8e-19 97.8 89 61.8
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 9.8e-19 97.1 73 69.9
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 9.8e-19 97.1 70 74.3
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 1.3e-18 96.7 92 63.0
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 1.3e-18 96.7 71 71.8
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 1.3e-18 96.7 92 59.8
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.7e-18 96.3 69 73.9
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 2.2e-18 95.9 73 68.5
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 2.2e-18 95.9 73 71.2
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 2.9e-18 95.5 73 68.5
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 2.9e-18 95.5 85 65.9
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 6.4e-18 94.4 73 69.9
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 1.1e-17 93.6 86 61.6
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 1.9e-17 92.8 92 56.5
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 2.4e-17 92.4 79 67.1
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 3.2e-17 92.0 70 70.0
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 5.4e-17 91.3 83 62.7
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 7.0e-17 90.9 75 62.7
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 9.2e-17 90.5 72 70.8
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 9.2e-17 90.5 76 65.8
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 9.2e-17 90.5 79 63.3
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 1.6e-16 89.7 66 69.7
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 1.6e-16 89.7 61 77.0
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 1.6e-16 89.7 69 63.8
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 2.7e-16 89.0 83 63.9
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 6.0e-16 87.8 79 62.0
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 6.0e-16 87.8 73 60.3
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 7.8e-16 87.4 79 62.0
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 7.8e-16 87.4 76 64.5
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 1.0e-15 87.0 74 66.2
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 1.7e-15 86.3 71 64.8
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 2.3e-15 85.9 78 62.8
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 3.0e-15 85.5 71 62.0
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 5.1e-15 84.7 64 68.8
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 5.1e-15 84.7 64 68.8
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 5.1e-15 84.7 71 63.4
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 6.6e-15 84.3 71 64.8
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 8.6e-15 84.0 77 63.6
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 1.1e-14 83.6 71 63.4
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 1.1e-14 83.6 80 62.5
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 1.5e-14 83.2 74 60.8
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 1.5e-14 83.2 71 64.8
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 5.6e-14 81.3 84 57.1
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 5.6e-14 81.3 84 57.1
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 5.6e-14 81.3 81 59.3
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 1.2e-13 80.1 69 63.8
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 2.1e-13 79.3 74 60.8
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 2.1e-13 79.3 69 60.9
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 8.1e-13 77.4 79 59.5
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 1.8e-12 76.3 77 55.8
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 3.4e-11 72.0 44 77.3
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 3.7e-10 68.6 54 70.4
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 9.2e-09 63.9 62 53.2
SEGI_19848 Sequoiadendron giganteum HOM05D008117 ORTHO05D010265 5.1e-07 58.2 61 54.1
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 2.5e-06 55.8 44 63.6
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 5.6e-06 54.7 40 70.0


User provided reference genes

Program Settings