Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 4.2e-116 421.4 218 100.0
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 9.6e-60 234.2 214 59.3
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 9.6e-60 234.2 214 60.3
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.5e-57 226.9 214 57.9
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 4.5e-57 225.3 212 57.5
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 9.9e-57 224.2 209 58.9
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.3e-56 223.8 214 59.8
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.7e-56 223.4 215 58.6
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.2e-56 223.0 214 56.1
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.8e-56 222.2 193 61.1
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 6.4e-56 221.5 185 65.4
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.9e-55 219.9 216 57.9
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.2e-55 219.2 209 57.9
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 7.1e-55 218.0 210 58.6
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.2e-54 217.2 208 56.7
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.9e-54 214.5 225 52.9
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.3e-53 213.8 216 53.7
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.9e-53 212.2 215 56.7
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.9e-53 212.2 215 56.7
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 5.1e-53 211.8 223 53.8
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 6.7e-53 211.5 154 70.1
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.1e-52 210.7 213 54.0
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.1e-52 210.7 212 58.0
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 7.4e-52 208.0 206 57.3
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 9.6e-52 207.6 211 57.3
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 4.0e-50 202.2 213 54.9
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.0e-48 197.6 209 52.2
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.1e-47 194.1 164 62.8
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.4e-47 193.7 152 63.8
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.4e-47 193.7 215 50.7
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 2.5e-47 193.0 141 68.1
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 2.5e-47 193.0 228 48.7
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-47 192.2 239 49.8
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.5e-47 191.8 190 56.3
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 9.3e-47 191.0 216 54.6
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 1.6e-46 190.3 213 53.5
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 4.6e-46 188.7 161 60.9
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.3e-45 187.2 148 61.5
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.8e-45 186.8 211 50.7
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 8.7e-45 184.5 270 42.2
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.5e-44 183.7 202 54.0
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.9e-44 183.3 184 53.8
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 1.3e-43 180.6 160 60.0
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.3e-43 180.6 210 53.3
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.6e-43 180.3 191 52.9
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.6e-43 180.3 155 60.6
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.1e-43 179.9 212 51.4
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 3.7e-43 179.1 192 52.6
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 3.7e-43 179.1 160 59.4
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.8e-43 178.7 195 52.8
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 8.2e-43 177.9 155 60.0
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 3.1e-42 176.0 160 58.1
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 5.3e-42 175.3 160 58.8
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 9.0e-42 174.5 292 40.1
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.2e-41 174.1 145 60.7
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 3.4e-41 172.6 181 51.9
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 4.5e-41 172.2 127 64.6
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.2e-40 169.9 205 45.4
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 3.8e-40 169.1 205 44.9
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.4e-39 167.2 157 58.6
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 1.9e-39 166.8 161 57.1
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.5e-39 166.4 161 57.1
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 3.2e-39 166.0 156 55.8
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.2e-39 165.6 153 59.5
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 4.2e-39 165.6 231 45.9
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 5.5e-39 165.2 119 68.1
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 2.1e-38 163.3 180 52.2
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 3.6e-38 162.5 170 54.7
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.0e-37 161.0 150 58.0
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.3e-37 160.6 193 50.8
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.0e-37 159.5 210 42.9
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 8.7e-37 157.9 142 57.7
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 3.3e-36 156.0 144 51.4
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 7.4e-36 154.8 212 44.8
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 7.7e-33 144.8 141 53.2
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 2.2e-32 143.3 96 74.0
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.4e-31 140.6 190 44.7
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.1e-30 136.7 217 42.4
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 3.1e-26 122.9 163 38.7
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 3.8e-24 115.9 168 39.9
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.1e-23 114.4 171 37.4
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.4e-23 114.0 158 41.1
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.9e-23 113.6 163 38.0
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 2.5e-23 113.2 158 38.6
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 2.5e-23 113.2 185 35.7
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 3.2e-23 112.8 175 38.3
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 4.2e-23 112.5 119 44.5
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 4.2e-23 112.5 163 37.4
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 5.5e-23 112.1 227 33.9
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 7.2e-23 111.7 169 38.5
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 9.4e-23 111.3 158 38.0
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.2e-22 110.9 173 35.8
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.2e-22 110.9 166 36.7
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 2.1e-22 110.2 181 36.5
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.1e-22 110.2 157 36.3
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 2.1e-22 110.2 153 37.3
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.7e-22 109.8 121 43.8
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.7e-22 109.8 227 33.5
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.6e-22 109.4 155 38.7
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.6e-22 109.4 137 48.9
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 3.6e-22 109.4 145 36.6
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 3.6e-22 109.4 181 36.5
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 3.6e-22 109.4 117 44.4
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 3.6e-22 109.4 225 33.8
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.7e-22 109.0 120 43.3
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 6.1e-22 108.6 156 37.2
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 7.9e-22 108.2 120 43.3
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 1.4e-21 107.5 124 53.2
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.8e-21 107.1 164 37.2
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.8e-21 107.1 118 41.5
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 2.3e-21 106.7 190 35.8
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 2.3e-21 106.7 156 38.5
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.0e-21 106.3 170 38.2
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 3.9e-21 105.9 155 38.1
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 6.7e-21 105.1 139 48.9
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 6.7e-21 105.1 121 41.3
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 8.8e-21 104.8 121 40.5
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 8.8e-21 104.8 118 40.7
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 8.8e-21 104.8 163 33.7
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.1e-20 104.4 113 38.9
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.0e-20 103.6 139 48.9
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.6e-20 103.2 155 38.1
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 2.6e-20 103.2 173 32.4
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.6e-20 103.2 221 33.5
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.3e-20 102.8 118 39.0
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 4.4e-20 102.4 82 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 7.4e-20 101.7 117 41.0
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 7.4e-20 101.7 171 33.9
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 9.7e-20 101.3 155 35.5
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.3e-19 100.9 119 40.3
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 2.8e-19 99.8 192 34.9
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 3.7e-19 99.4 151 35.1
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 6.3e-19 98.6 187 32.1
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.8e-18 97.1 106 43.4
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 3.1e-18 96.3 195 31.8
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 3.1e-18 96.3 153 35.3
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.1e-18 95.9 70 68.6
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 5.3e-18 95.5 151 34.4
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.0e-17 93.6 150 33.3
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.0e-17 93.6 118 38.1
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 2.6e-17 93.2 119 36.1
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.5e-17 92.8 118 40.7
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 7.7e-17 91.7 125 38.4
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 1.7e-16 90.5 187 31.0
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.7e-16 90.5 180 33.3
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 3.8e-16 89.4 92 45.7
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 6.5e-16 88.6 110 39.1
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 5.5e-15 85.5 123 39.0
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.5e-15 85.5 122 45.9
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 5.5e-15 85.5 136 44.9
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 7.2e-15 85.1 123 39.0
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 7.2e-15 85.1 127 44.1
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 9.4e-15 84.7 111 37.8
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.2e-14 84.3 81 44.4
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.6e-14 84.0 121 37.2
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.3e-13 80.1 175 30.3
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 1.2e-12 77.8 166 29.5
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.2e-12 77.8 158 33.5
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.6e-12 76.6 155 32.9
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.3e-11 74.3 121 35.5
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 4.8e-11 72.4 39 87.2
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 6.3e-11 72.0 164 28.7
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.1e-10 69.3 76 43.4
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.0e-09 67.0 63 55.6
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 3.5e-09 66.2 173 30.6


User provided reference genes

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