Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 1.1e-98 363.2 180 100.0
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.0e-91 340.1 180 91.7
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.5e-90 335.5 180 90.6
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 3.3e-90 335.1 180 89.4
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 88.9
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 2.8e-89 332.0 180 88.9
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 87.8
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 88.3
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 88.3
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 1.8e-88 329.3 180 87.2
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 1.8e-88 329.3 180 87.8
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 86.7
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 87.8
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 85.6
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 85.6
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 85.6
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 85.6
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 86.1
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 87.8
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 3.4e-87 325.1 179 87.2
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 85.6
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 85.6
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 83.9
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 86.7
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 1.7e-86 322.8 180 85.6
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 85.6
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 82.8
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 83.9
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 3.8e-86 321.6 180 85.6
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 83.9
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 83.3
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 84.4
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 6.4e-86 320.9 180 84.4
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 84.4
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 83.3
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 84.4
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 85.6
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 82.8
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 85.6
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 85.6
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 83.3
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 85.6
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 82.8
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 4.2e-85 318.2 180 82.2
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 4.2e-85 318.2 180 82.2
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 82.2
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 7.1e-85 317.4 180 82.2
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 85.0
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 82.8
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 83.3
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 83.9
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 82.2
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 82.8
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 81.7
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 2.1e-84 315.8 181 83.4
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 2.1e-84 315.8 180 82.8
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 6.0e-84 314.3 178 82.6
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 81.7
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 1.8e-83 312.8 180 82.2
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 2.3e-83 312.4 180 82.2
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 1.5e-82 309.7 179 82.7
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 1.5e-82 309.7 180 80.6
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.9e-82 309.3 178 82.0
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 5.6e-82 307.8 181 81.8
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 2.8e-81 305.4 199 73.9
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 8.1e-81 303.9 180 81.1
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 2.4e-80 302.4 180 79.4
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 3.1e-80 302.0 178 79.8
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 5.3e-80 301.2 180 77.8
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.2e-79 300.1 178 80.9
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 5.8e-79 297.7 203 70.9
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.9e-78 295.4 165 84.2
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 3.8e-78 295.0 206 71.4
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 1.9e-77 292.7 187 75.4
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 1.9e-77 292.7 180 76.7
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 9.3e-77 290.4 159 86.8
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.6e-76 289.7 174 80.5
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 3.5e-76 288.5 160 87.5
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 3.9e-75 285.0 178 75.3
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 5.1e-75 284.6 175 78.3
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 5.7e-74 281.2 161 82.6
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 7.4e-74 280.8 159 84.3
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 1.1e-72 276.9 177 72.9
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 6.9e-72 274.2 180 75.0
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 2.0e-71 272.7 160 80.6
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 3.4e-71 271.9 160 78.8
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 4.5e-71 271.6 172 79.1
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.3e-70 270.0 167 76.6
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 2.2e-70 269.2 156 80.1
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 2.9e-70 268.9 162 77.2
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 7.2e-69 264.2 175 66.9
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 3.6e-68 261.9 139 89.2
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 1.1e-66 256.9 164 75.0
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.9e-66 256.1 153 79.7
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 1.6e-65 253.1 175 64.6
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 2.2e-65 252.7 218 62.8
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.4e-64 250.0 175 65.7
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.4e-64 250.0 139 83.5
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 5.5e-61 238.0 181 68.5
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 1.8e-59 233.0 171 62.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.6e-55 219.2 114 87.7
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 4.4e-50 201.8 121 77.7
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.3e-49 200.3 174 53.4
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 2.4e-48 196.1 117 75.2
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 8.5e-46 187.6 185 55.7
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 8.5e-46 187.6 185 55.7
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 4.7e-44 181.8 130 66.2
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 3.5e-39 165.6 92 79.3
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 2.5e-37 159.5 174 45.4
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 8.0e-36 154.5 91 78.0
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.0e-35 154.1 96 75.0
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 1.4e-35 153.7 174 43.1
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 1.8e-35 153.3 113 69.9
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 4.8e-33 145.2 116 61.2
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 2.5e-29 132.9 177 44.1
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.4e-26 122.5 80 72.5
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.7e-23 112.8 71 67.6
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.7e-22 110.2 99 59.6
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.1e-20 103.2 65 76.9
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 4.0e-19 99.0 56 85.7
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 8.9e-19 97.8 100 57.0
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 9.8e-18 94.4 56 80.4
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 3.7e-17 92.4 50 86.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.3e-14 84.0 46 84.8
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 5.4e-08 62.0 45 71.1
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 8.6e-06 54.7 57 52.6


User provided reference genes

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