Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 7.6e-189 664.1 443 100.0
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.3e-129 466.5 440 64.5
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 4.7e-114 415.6 438 54.8
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 3.1e-113 412.9 439 52.8
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.8e-105 387.1 438 63.9
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.5e-104 384.0 444 55.2
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 1.5e-104 384.0 438 49.1
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 7.6e-104 381.7 442 50.2
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 2.2e-103 380.2 443 55.8
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.2e-103 380.2 425 48.9
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 3.8e-103 379.4 441 48.3
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 4.9e-103 379.0 444 49.8
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 2.4e-102 376.7 439 54.2
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 4.2e-102 375.9 438 48.6
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.0e-101 372.1 438 47.5
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 2.5e-99 366.7 418 47.8
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 2.5e-99 366.7 439 48.1
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 7.3e-99 365.2 439 48.1
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 9.6e-99 364.8 544 43.9
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 1.7e-95 354.0 444 52.0
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 4.9e-95 352.4 373 52.5
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.9e-94 350.5 436 50.7
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 7.1e-94 348.6 438 46.3
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 9.3e-94 348.2 438 53.0
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 7.8e-93 345.1 438 52.5
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 7.8e-93 345.1 441 44.4
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 1.1e-91 341.3 429 49.9
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 9.6e-91 338.2 440 44.8
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 3.6e-90 336.3 439 43.7
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 2.4e-89 333.6 474 42.8
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 2.4e-89 333.6 371 48.5
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 5.3e-89 332.4 443 43.1
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 1.5e-88 330.9 441 43.3
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 4.9e-87 325.9 441 46.5
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 4.9e-87 325.9 438 52.5
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 4.9e-87 325.9 437 47.6
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 8.4e-87 325.1 426 44.8
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.1e-86 324.7 442 45.5
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.1e-85 320.5 439 44.0
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 2.7e-85 320.1 437 49.2
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 3.5e-85 319.7 370 50.5
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 3.5e-85 319.7 438 43.2
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 7.9e-85 318.5 437 46.5
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.3e-84 317.8 425 42.8
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.9e-84 316.2 441 41.0
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 3.9e-84 316.2 441 44.2
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 3.9e-84 316.2 442 46.4
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 5.1e-84 315.8 425 42.8
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.5e-83 313.5 439 47.6
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 4.3e-83 312.8 444 47.7
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 9.6e-83 311.6 439 42.4
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.6e-83 311.6 317 53.0
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 1.6e-82 310.8 441 39.2
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 2.8e-82 310.1 439 41.9
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 4.8e-82 309.3 441 45.6
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 6.2e-82 308.9 440 40.9
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 8.1e-82 308.5 441 41.0
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-81 307.8 437 40.3
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 1.2e-80 304.7 440 40.7
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 2.9e-79 300.1 441 44.2
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 1.1e-78 298.1 436 39.4
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 4.2e-78 296.2 449 40.3
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 7.1e-78 295.4 441 49.2
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 7.1e-78 295.4 439 48.3
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 9.3e-78 295.0 437 43.2
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.2e-77 294.7 459 43.8
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 1.6e-77 294.3 442 38.7
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 2.7e-77 293.5 441 44.7
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 7.9e-77 292.0 469 37.3
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.9e-76 289.7 439 49.2
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.5e-75 287.7 441 40.6
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 4.3e-75 286.2 593 35.8
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 7.4e-75 285.4 373 52.0
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 1.6e-74 284.3 440 39.3
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 4.8e-74 282.7 206 69.9
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.2e-74 282.3 464 41.6
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.1e-73 281.6 447 38.7
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.8e-73 280.8 441 38.3
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 5.3e-73 279.3 456 37.9
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 5.3e-73 279.3 456 37.9
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 2.0e-72 277.3 456 38.2
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 2.6e-72 276.9 444 39.0
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 5.8e-72 275.8 437 39.4
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 5.8e-72 275.8 439 45.1
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 1.0e-71 275.0 442 42.1
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 5.0e-71 272.7 498 36.5
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 8.4e-71 271.9 303 51.5
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 1.1e-70 271.6 440 39.8
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.1e-70 271.6 437 39.1
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 2.5e-70 270.4 441 47.6
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.5e-70 270.4 373 53.1
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 2.5e-70 270.4 442 44.3
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 5.5e-70 269.2 465 37.8
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 4.6e-69 266.2 431 38.3
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 1.1e-67 261.5 348 51.7
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 5.3e-65 252.7 439 37.8
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.5e-64 251.1 439 40.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.0e-64 250.8 442 40.0
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 6.5e-63 245.7 450 43.3
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.9e-62 244.2 424 43.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 2.5e-62 243.8 429 39.6
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 2.5e-62 243.8 353 38.8
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 5.1e-60 236.1 335 40.9
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 4.3e-59 233.0 424 36.6
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 9.7e-59 231.9 231 49.8
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 6.5e-55 219.2 458 33.2
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.6e-53 214.5 480 35.6
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 2.1e-53 214.2 343 39.7
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 6.7e-52 209.1 206 54.9
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 2.2e-50 204.1 442 31.0
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 6.3e-50 202.6 324 37.3
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 5.9e-48 196.1 235 45.5
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 7.7e-48 195.7 610 29.3
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 1.3e-47 194.9 310 41.0
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.5e-46 189.5 413 32.7
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 9.4e-46 188.7 447 33.6
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 1.1e-43 181.8 348 38.8
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 3.1e-41 173.7 376 31.1
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.6e-40 171.4 234 42.3
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 4.5e-40 169.9 207 46.9
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 7.2e-38 162.5 308 36.0
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.4e-36 158.3 370 29.2
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.8e-36 157.9 437 36.2
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 3.0e-36 157.1 205 45.4
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 6.8e-36 156.0 229 39.3
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 1.7e-31 141.4 373 35.7
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.0e-28 132.1 168 47.6
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.4e-28 131.7 340 32.6
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.5e-27 128.3 154 45.5
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 3.4e-27 127.1 217 37.8
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 1.1e-25 122.1 100 56.0
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.9e-22 111.3 119 47.1
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-21 108.6 118 45.8
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 2.8e-21 107.5 215 34.9
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.8e-20 104.8 425 24.2
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.9e-20 102.4 130 43.8
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 8.9e-20 102.4 356 26.7
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 3.4e-19 100.5 149 43.0
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 1.0e-15 89.0 374 25.4
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 1.3e-15 88.6 153 36.6
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 1.5e-14 85.1 84 58.3
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 7.3e-14 82.8 140 38.6
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 2.1e-13 81.3 152 34.9
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 6.2e-13 79.7 202 30.2
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 4.1e-09 67.0 78 39.7
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 2.7e-08 64.3 106 39.6
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 2.7e-08 64.3 372 35.8
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 8.6e-07 59.3 369 30.6


User provided reference genes

Program Settings