Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 3.2e-27 124.4 65 100.0
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 2.0e-13 78.6 62 72.6
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 3.4e-13 77.8 51 74.5
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 4.5e-13 77.4 62 69.4
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 5.9e-13 77.0 50 78.0
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 5.9e-13 77.0 60 73.3
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.0e-12 76.3 60 68.3
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.0e-12 76.3 60 66.7
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.3e-12 75.9 60 68.3
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 1.3e-12 75.9 62 66.1
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 2.2e-12 75.1 53 71.7
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 2.2e-12 75.1 60 66.7
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 2.9e-12 74.7 59 72.9
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.8e-12 74.3 60 66.7
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 5.0e-12 73.9 62 66.1
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 5.0e-12 73.9 57 71.9
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 6.5e-12 73.6 60 66.7
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 8.4e-12 73.2 52 73.1
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 8.4e-12 73.2 51 72.5
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 1.1e-11 72.8 50 76.0
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 9.3e-11 69.7 66 62.1
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 9.3e-11 69.7 51 68.6
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 1.2e-10 69.3 61 59.0
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 1.2e-10 69.3 61 59.0
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 1.2e-10 69.3 52 69.2
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 2.7e-10 68.2 52 67.3
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 3.5e-10 67.8 50 72.0
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 3.5e-10 67.8 53 67.9
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 4.6e-10 67.4 60 65.0
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 4.6e-10 67.4 60 65.0
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 7.9e-10 66.6 60 65.0
Lj6g0010842 Lotus japonicus HOM05D007891 ORTHO05D009992 7.9e-10 66.6 65 60.0
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 7.9e-10 66.6 50 70.0
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 7.9e-10 66.6 63 58.7
AL1G47370 Arabidopsis lyrata HOM05D007891 ORTHO05D009992 1.0e-09 66.2 59 61.0
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 1.3e-09 65.9 50 68.0
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 1.8e-09 65.5 61 57.4
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 1.8e-09 65.5 61 57.4
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 1.8e-09 65.5 58 62.1
AT1G33055 Arabidopsis thaliana HOM05D007891 ORTHO05D009992 2.3e-09 65.1 61 57.4
TPR.G27295 Trifolium pratense HOM05D007891 ORTHO05D009992 2.3e-09 65.1 50 68.0
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 2.3e-09 65.1 53 64.2
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 3.0e-09 64.7 60 60.0
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 3.9e-09 64.3 54 66.7
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 3.9e-09 64.3 61 55.7
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 6.7e-09 63.5 60 60.0
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 1.1e-08 62.8 61 57.4
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 1.5e-08 62.4 51 68.6
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 1.5e-08 62.4 61 54.1
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 1.5e-08 62.4 52 65.4
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 3.3e-08 61.2 60 58.3
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 4.3e-08 60.8 48 68.8
A05p24400 Brassica napus HOM05D007891 ORTHO05D009992 1.3e-07 59.3 59 54.2
C04p42520 Brassica napus HOM05D007891 ORTHO05D009992 1.3e-07 59.3 60 53.3
BraA05t21332Z Brassica rapa HOM05D007891 ORTHO05D009992 1.3e-07 59.3 59 54.2
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 1.3e-07 59.3 55 60.0
Os07g0469200 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 1.6e-07 58.9 62 61.3
BcaC02g09428 Brassica carinata HOM05D007891 ORTHO05D009992 2.8e-07 58.2 60 51.7
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 2.8e-07 58.2 45 66.7
Actinidia22232 Actinidia chinensis HOM05D007891 ORTHO05D009992 3.7e-07 57.8 59 59.3
BolC4t25828H Brassica oleracea HOM05D007891 ORTHO05D009992 1.1e-06 56.2 60 51.7
BolC8t47912H Brassica oleracea HOM05D007891 ORTHO05D009992 1.1e-06 56.2 57 50.9
BcaC05g27811 Brassica carinata HOM05D007891 ORTHO05D009992 1.4e-06 55.8 59 54.2
C05p38140 Brassica napus HOM05D007891 ORTHO05D009992 1.4e-06 55.8 59 54.2
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 2.4e-06 55.1 46 60.9
Potri.001G452500 Populus trichocarpa HOM05D007891 ORTHO05D009992 3.1e-06 54.7 61 55.7
BcaB04g17933 Brassica carinata HOM05D007891 ORTHO05D009992 5.3e-06 53.9 57 50.9
BcaNung04896 Brassica carinata HOM05D007891 ORTHO05D009992 9.0e-06 53.1 57 49.1


User provided reference genes

Program Settings