Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 5.7e-242 840.5 425 100.0
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 7.5e-226 786.9 422 91.7
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 8.3e-225 783.5 425 91.1
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 7.0e-224 780.4 425 90.6
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 3.5e-223 778.1 425 90.8
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 5.9e-223 777.3 425 90.8
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 7.8e-223 776.9 425 90.6
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 1.3e-222 776.2 425 90.1
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.3e-222 776.2 425 90.8
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 2.9e-222 775.0 425 90.1
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.9e-222 775.0 425 90.4
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 3.8e-222 774.6 425 90.1
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 8.6e-222 773.5 424 89.9
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 1.5e-221 772.7 425 89.6
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.5e-221 771.9 425 90.1
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 2.5e-221 771.9 425 89.4
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 3.3e-221 771.5 425 89.4
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 4.3e-221 771.2 425 88.5
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 4.3e-221 771.2 425 88.7
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.2e-220 769.6 425 89.6
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 1.6e-220 769.2 425 89.6
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 6.1e-220 767.3 425 88.0
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 1.0e-219 766.5 425 87.5
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 1.8e-219 765.8 425 88.0
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 1.5e-218 762.7 425 87.5
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 5.7e-218 760.8 425 87.1
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 1.7e-217 759.2 425 86.4
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 6.4e-217 757.3 425 89.2
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 8.3e-217 756.9 425 87.5
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 1.4e-216 756.1 417 89.4
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.4e-216 755.4 424 86.8
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 3.2e-216 755.0 425 87.5
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.1e-216 754.6 424 86.8
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 1.2e-215 753.1 425 86.8
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-215 752.7 424 86.8
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 2.0e-215 752.3 421 87.4
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 2.0e-215 752.3 425 86.6
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 4.6e-215 751.1 425 86.6
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 5.9e-215 750.7 449 84.4
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 7.8e-215 750.4 422 86.7
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 7.8e-215 750.4 425 86.4
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 1.3e-214 749.6 425 85.2
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.3e-214 749.6 426 87.3
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 1.7e-214 749.2 425 85.6
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.7e-214 749.2 422 88.2
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 2.3e-214 748.8 422 86.7
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 5.0e-214 747.7 425 85.9
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 1.5e-213 746.1 421 86.9
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.9e-213 745.7 425 87.5
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 3.3e-213 745.0 415 88.7
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 7.3e-213 743.8 425 85.6
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 1.2e-212 743.0 425 85.4
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.6e-212 742.7 426 86.4
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 1.6e-212 742.7 425 85.4
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 2.8e-212 741.9 426 86.4
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 3.6e-212 741.5 425 85.9
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 4.7e-212 741.1 425 85.6
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 6.2e-212 740.7 425 86.4
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 6.2e-212 740.7 425 86.4
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.2e-212 740.7 438 83.8
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 8.0e-212 740.3 425 86.8
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 1.1e-211 740.0 425 85.6
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 1.1e-211 740.0 425 85.6
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 1.1e-211 740.0 424 85.6
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 1.4e-211 739.6 425 85.9
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 1.4e-211 739.6 425 85.9
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 1.8e-211 739.2 425 85.4
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 3.1e-211 738.4 425 85.9
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 4.0e-211 738.0 425 84.9
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.8e-211 737.3 414 87.4
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 8.9e-211 736.9 471 80.5
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.2e-210 736.5 425 84.7
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 2.0e-210 735.7 421 86.0
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 5.8e-210 734.2 420 86.2
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 5.8e-210 734.2 425 85.9
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 2.2e-209 732.3 438 84.0
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 2.9e-209 731.9 425 85.9
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 2.9e-209 731.9 425 85.6
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 3.7e-209 731.5 420 86.0
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 4.9e-209 731.1 425 85.9
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 6.4e-209 730.7 425 83.8
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 4.1e-208 728.0 425 83.8
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 2.0e-207 725.7 422 84.6
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 4.6e-207 724.5 415 86.3
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 3.0e-206 721.8 425 84.2
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 8.6e-206 720.3 425 82.6
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 2.5e-205 718.8 422 82.5
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 2.3e-203 712.2 425 81.6
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 3.1e-203 711.8 420 83.1
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 5.2e-203 711.1 413 86.0
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.2e-203 711.1 425 80.9
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.7e-201 706.1 425 80.7
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 1.4e-200 703.0 422 81.5
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 4.1e-200 701.4 422 81.3
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 5.4e-200 701.0 422 81.3
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 2.1e-199 699.1 422 81.0
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 6.0e-199 697.6 425 82.8
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 3.3e-197 691.8 425 82.6
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 3.6e-196 688.3 425 81.4
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 3.1e-195 685.3 422 78.7
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.6e-194 682.2 419 79.5
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 7.6e-194 680.6 425 80.9
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 2.4e-192 675.6 425 79.5
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 4.1e-192 674.9 425 80.0
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.6e-191 672.9 433 79.4
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 4.3e-189 664.8 420 76.9
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 3.6e-188 661.8 423 75.2
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.4e-187 659.8 416 78.8
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 1.3e-185 653.3 413 79.4
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 2.2e-185 652.5 423 74.5
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 6.4e-185 651.0 417 78.9
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.9e-184 649.4 422 77.7
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.9e-184 649.4 423 73.8
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 3.2e-184 648.7 611 58.4
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 2.1e-183 646.0 442 74.7
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 6.0e-183 644.4 401 81.0
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 3.0e-182 642.1 422 74.6
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 4.3e-181 638.3 415 77.1
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 9.6e-181 637.1 475 70.7
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.1e-180 636.0 416 75.2
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.6e-180 635.2 412 76.0
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.4e-179 632.5 406 76.4
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 6.9e-179 630.9 364 84.6
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 9.9e-178 627.1 425 72.5
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 9.3e-176 620.5 353 85.3
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 1.2e-175 620.2 410 74.9
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.3e-173 611.7 413 74.1
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 2.4e-171 605.9 357 84.3
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 6.9e-171 604.4 344 86.0
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 4.5e-170 601.7 340 87.1
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 5.8e-170 601.3 339 86.7
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 2.2e-169 599.4 410 72.9
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 1.2e-167 593.6 430 69.8
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 7.4e-165 584.3 431 69.6
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.8e-164 582.4 403 71.5
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 6.5e-161 571.2 415 71.3
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 1.6e-159 566.6 413 65.9
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 9.7e-157 557.4 314 87.9
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.8e-156 555.8 399 70.2
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 2.4e-147 526.2 303 85.1
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-145 520.8 413 66.6
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 2.2e-140 503.1 422 60.7
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 4.5e-138 495.4 281 84.7
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.0e-134 484.2 442 58.1
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 8.2e-132 474.6 286 79.4
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 5.5e-128 461.8 435 56.8
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 4.8e-116 422.2 235 87.7
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 1.1e-115 421.0 431 52.2
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 7.5e-109 398.3 252 77.0
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 2.9e-100 369.8 436 46.8
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.5e-93 347.4 465 44.7
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 2.8e-87 326.6 171 91.8
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.2e-85 321.2 199 80.9
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 2.9e-84 316.6 410 43.4
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 3.9e-73 279.6 239 61.1
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 3.6e-71 273.1 154 83.8
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 2.4e-70 270.4 168 77.4
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 3.5e-66 256.5 166 75.9
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 7.9e-58 228.8 158 74.7
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.3e-57 228.0 253 53.8
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 5.1e-57 226.1 161 70.8
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 2.9e-36 157.1 96 78.1
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 2.0e-32 144.4 83 83.1
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 1.7e-31 141.4 86 77.9
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 1.2e-29 135.2 126 58.7
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 1.5e-29 134.8 235 35.7
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.6e-24 117.5 72 80.6
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 1.1e-19 102.1 58 82.8
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 1.1e-19 102.1 129 46.5
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 1.2e-18 98.6 168 39.9
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 2.1e-18 97.8 55 80.0
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 2.7e-18 97.4 95 57.9
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 2.8e-15 87.4 55 69.1
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 6.3e-15 86.3 230 30.0
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 9.1e-14 82.4 48 83.3
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 1.6e-10 71.6 47 76.6
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 8.0e-10 69.3 94 42.6
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.4e-09 68.6 70 50.0
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 2.3e-09 67.8 42 73.8
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 1.5e-08 65.1 38 78.9
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 1.5e-08 65.1 32 84.4
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 3.4e-08 63.9 44 65.9
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 3.7e-07 60.5 30 86.7


User provided reference genes

Program Settings