Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 5.5e-281 970.3 492 100.0
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 4.0e-223 778.1 530 77.0
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 4.5e-222 774.6 520 76.7
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.4e-221 770.4 520 76.5
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 8.4e-221 770.4 520 76.7
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 5.1e-218 761.1 530 74.9
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 6.7e-218 760.8 522 74.5
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 4.8e-216 754.6 531 74.4
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 8.1e-216 753.8 524 75.0
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.0e-214 749.2 521 74.1
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 3.4e-214 748.4 523 73.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 5.8e-214 747.7 525 72.6
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 7.6e-214 747.3 518 75.3
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 9.9e-214 746.9 527 74.0
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.9e-212 742.7 523 73.2
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.3e-210 736.5 522 72.0
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.8e-210 736.1 517 74.3
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 3.0e-210 735.3 513 73.5
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.1e-209 733.4 523 72.5
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.5e-209 732.3 524 73.1
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 2.5e-209 732.3 524 73.3
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 3.3e-209 731.9 523 71.7
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 7.4e-209 730.7 514 72.6
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.1e-208 729.2 524 71.8
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.8e-208 728.0 521 71.8
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 8.2e-208 727.2 523 72.1
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.1e-207 726.9 525 72.6
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-207 726.9 525 72.8
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.1e-207 726.9 525 72.6
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.1e-207 726.9 525 72.6
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 2.2e-205 719.2 518 71.0
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 2.2e-205 719.2 518 73.4
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 4.9e-205 718.0 529 71.6
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 8.4e-205 717.2 532 71.1
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 1.1e-204 716.8 516 71.5
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 2.5e-204 715.7 525 72.0
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 5.5e-204 714.5 530 70.4
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 7.1e-204 714.1 524 71.2
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 9.3e-204 713.8 530 70.4
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.2e-203 713.4 530 70.0
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 1.2e-203 713.4 530 70.2
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 2.1e-203 712.6 519 71.9
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 2.1e-203 712.6 529 70.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.1e-203 712.6 529 71.1
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.1e-203 712.6 516 71.9
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 3.5e-203 711.8 529 70.5
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 3.5e-203 711.8 523 70.7
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 6.0e-203 711.1 459 78.0
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 1.3e-202 709.9 523 69.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-202 709.5 530 70.2
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 3.0e-202 708.8 530 70.2
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 3.0e-202 708.8 530 70.2
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.9e-202 708.4 526 70.3
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 8.7e-202 707.2 529 70.5
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.5e-201 706.4 523 71.7
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 2.5e-201 705.7 527 70.2
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.5e-201 705.7 524 68.5
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 5.7e-201 704.5 522 69.3
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 9.7e-201 703.7 524 69.1
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 3.7e-200 701.8 527 69.8
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 4.8e-200 701.4 520 70.6
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 4.8e-200 701.4 522 68.8
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.8e-200 701.4 524 68.1
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.2e-200 700.7 510 72.4
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.8e-199 699.5 462 76.6
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 2.4e-199 699.1 518 70.3
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 3.1e-199 698.7 531 68.5
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 4.1e-199 698.4 521 68.5
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 5.3e-199 698.0 522 68.6
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.3e-199 698.0 529 69.9
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 9.0e-199 697.2 530 67.5
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.5e-198 696.4 512 69.5
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 3.4e-198 695.3 479 73.9
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.7e-197 693.0 522 68.0
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.7e-197 693.0 519 69.4
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 8.5e-197 690.6 517 68.1
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.1e-196 690.3 511 70.3
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.4e-196 689.9 554 66.4
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 2.5e-196 689.1 535 67.9
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 7.2e-196 687.6 525 67.6
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.6e-195 686.4 526 68.1
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.7e-195 685.6 531 69.1
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.7e-195 685.6 509 69.7
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.0e-194 683.7 510 67.6
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.5e-193 679.9 517 69.8
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.4e-191 673.3 515 67.6
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 5.9e-190 667.9 475 71.6
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 8.5e-189 664.1 432 78.0
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.4e-188 663.3 475 71.4
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 2.5e-188 662.5 521 65.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 4.2e-188 661.8 521 65.1
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.0e-186 657.1 520 64.2
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.0e-186 657.1 503 68.2
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.3e-186 656.0 521 64.1
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 6.7e-186 654.4 522 63.6
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 8.8e-186 654.1 517 64.4
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 9.7e-185 650.6 517 64.6
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 7.0e-183 644.4 516 64.1
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 7.0e-183 644.4 533 64.4
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.5e-182 643.3 520 64.4
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 2.6e-182 642.5 456 69.3
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 2.9e-181 639.0 516 63.6
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 2.9e-181 639.0 521 62.8
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 5.0e-181 638.3 425 76.2
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 5.5e-180 634.8 521 62.8
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 9.4e-180 634.0 522 61.5
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 5.2e-178 628.2 519 61.3
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.3e-176 623.6 460 66.7
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.1e-175 620.5 452 71.0
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 4.1e-175 618.6 531 60.1
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.1e-164 583.9 491 60.9
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.1e-164 583.9 529 57.8
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 2.5e-164 582.8 527 58.1
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 8.0e-163 577.8 514 58.0
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.5e-158 562.0 391 72.1
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.2e-155 553.9 387 72.9
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.8e-152 542.7 492 58.3
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 3.1e-151 539.3 460 59.3
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.3e-149 533.1 385 70.6
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 2.6e-145 519.6 521 54.9
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.5e-137 493.8 391 63.4
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.7e-134 483.0 381 63.0
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.5e-132 477.2 361 67.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 4.3e-132 475.7 341 70.7
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 6.8e-130 468.4 317 74.1
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 8.4e-120 434.9 325 66.2
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 6.6e-117 425.2 471 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.5e-116 424.1 522 45.0
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.4e-113 412.5 455 46.6
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 4.6e-102 375.9 556 39.2
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 3.8e-96 356.3 541 37.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.1e-90 338.2 228 77.2
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.9e-87 327.4 250 68.0
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 6.3e-75 285.8 194 73.2
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.6e-62 244.6 189 68.3
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 2.7e-54 217.2 180 64.4
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 5.0e-48 196.4 151 67.5
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.6e-46 190.3 138 73.9
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.1e-42 178.7 153 66.0
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.8e-42 177.9 139 69.1
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 7.0e-42 176.0 171 52.6
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 7.0e-42 176.0 159 54.1
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 3.0e-37 160.6 129 64.3
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 3.2e-34 150.6 119 66.4
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 7.8e-33 146.0 97 74.2
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.4e-26 124.4 140 50.0
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 2.4e-18 97.8 74 71.6
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 4.6e-17 93.6 59 74.6
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.1e-15 89.0 477 23.3
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 6.2e-14 83.2 502 22.9
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 6.8e-13 79.7 77 50.6
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 6.8e-13 79.7 77 50.6
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 5.4e-10 70.1 46 71.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.7e-08 65.1 60 55.0
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 6.6e-08 63.2 48 64.6
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.5e-07 62.0 65 52.3


User provided reference genes

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