Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 1.9e-81 305.8 159 100.0
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 1.2e-48 196.8 164 65.2
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.6e-48 196.4 165 58.8
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.6e-48 195.3 161 62.7
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 8.0e-48 194.1 164 66.5
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.1e-47 192.2 155 61.3
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 5.2e-47 191.4 173 56.6
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 1.2e-46 190.3 166 62.0
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 2.0e-46 189.5 159 60.4
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.6e-46 189.1 165 64.8
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 5.8e-46 188.0 161 57.8
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.7e-45 186.4 161 57.1
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 1.7e-45 186.4 161 57.8
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 3.7e-45 185.3 161 56.5
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 3.7e-45 185.3 160 58.1
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 4.9e-45 184.9 161 57.8
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 6.4e-45 184.5 160 58.1
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 6.4e-45 184.5 171 60.8
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.1e-44 183.7 160 58.1
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.9e-44 183.0 161 54.7
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 5.4e-44 181.4 163 52.8
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 5.4e-44 181.4 159 55.3
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 7.0e-44 181.0 164 56.1
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.2e-43 180.3 163 51.5
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.0e-43 179.5 160 55.6
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 4.6e-43 178.3 163 51.5
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 6.0e-43 177.9 159 55.3
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 3.0e-42 175.6 159 54.1
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 3.9e-42 175.3 163 61.3
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 3.9e-42 175.3 159 53.5
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 3.9e-42 175.3 164 53.7
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 3.9e-42 175.3 164 60.4
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 6.6e-42 174.5 163 60.1
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 8.6e-42 174.1 163 52.8
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 1.9e-41 172.9 199 51.8
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.5e-41 172.6 161 56.5
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.5e-41 172.6 161 56.5
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 3.3e-41 172.2 160 53.1
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 3.3e-41 172.2 159 55.3
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 7.3e-41 171.0 162 58.6
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 9.5e-41 170.6 159 55.3
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 9.5e-41 170.6 159 55.3
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 9.5e-41 170.6 159 52.8
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.2e-40 170.2 159 56.6
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 1.6e-40 169.9 163 52.1
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 2.1e-40 169.5 165 51.5
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 3.6e-40 168.7 159 52.2
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 8.1e-40 167.5 159 54.1
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.1e-40 167.5 162 51.9
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.1e-39 167.2 161 54.7
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.1e-39 167.2 159 59.7
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.1e-39 167.2 157 56.1
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 2.3e-39 166.0 156 49.4
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 4.0e-39 165.2 157 51.0
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 4.0e-39 165.2 223 44.8
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 4.0e-39 165.2 156 51.3
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 5.2e-39 164.9 161 60.9
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 5.2e-39 164.9 159 59.1
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.2e-39 164.9 159 57.2
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 6.8e-39 164.5 156 49.4
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 8.9e-39 164.1 160 51.2
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 8.9e-39 164.1 160 52.5
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 8.9e-39 164.1 168 56.0
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 8.9e-39 164.1 164 53.0
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.5e-38 163.3 159 56.6
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.5e-38 163.3 160 50.0
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.0e-38 162.9 158 52.5
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 2.0e-38 162.9 156 48.7
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 2.6e-38 162.5 162 54.3
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 4.4e-38 161.8 165 54.5
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 4.4e-38 161.8 159 50.3
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 7.5e-38 161.0 156 48.1
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 7.5e-38 161.0 157 50.3
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-37 159.8 156 48.1
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.2e-37 159.5 157 50.3
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.2e-37 159.5 158 49.4
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 8.3e-37 157.5 167 49.1
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 1.1e-36 157.1 165 55.8
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.1e-36 157.1 160 55.6
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 1.9e-36 156.4 160 52.5
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.2e-36 155.6 161 52.8
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.2e-35 153.7 161 58.4
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 1.2e-35 153.7 244 43.0
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.6e-35 153.3 161 52.8
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.0e-34 150.6 168 46.4
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 1.3e-34 150.2 164 50.6
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.7e-34 149.8 192 43.8
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 3.0e-34 149.1 159 47.2
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 3.9e-34 148.7 162 52.5
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 5.1e-34 148.3 200 42.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 6.6e-34 147.9 193 43.0
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 8.6e-34 147.5 156 49.4
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 1.1e-33 147.1 145 60.0
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.5e-33 146.7 167 48.5
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 1.9e-33 146.4 267 35.2
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 7.3e-33 144.4 150 50.7
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.2e-32 143.7 164 48.2
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.6e-32 143.3 159 45.3
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.6e-32 143.3 159 45.3
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.8e-32 142.5 164 48.2
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 3.6e-32 142.1 159 55.3
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 6.2e-32 141.4 172 50.0
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 8.1e-32 141.0 159 47.8
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.3e-31 139.4 158 46.2
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 2.3e-31 139.4 221 43.4
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 3.1e-31 139.0 163 50.9
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 3.4e-30 135.6 158 50.0
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 4.4e-30 135.2 155 46.5
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 4.4e-30 135.2 163 54.0
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 5.8e-30 134.8 163 46.6
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 5.8e-30 134.8 114 61.4
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 5.8e-30 134.8 157 43.3
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 2.4e-28 129.4 170 50.6
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 5.4e-28 128.3 161 42.2
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 7.1e-28 127.9 153 47.7
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 7.1e-28 127.9 113 54.9
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 2.1e-27 126.3 150 48.0
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 2.7e-27 125.9 156 44.2
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.7e-27 125.9 156 46.8
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 3.5e-27 125.6 156 44.2
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 4.6e-27 125.2 146 45.2
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 4.6e-27 125.2 177 39.0
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.3e-26 123.6 147 46.9
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.3e-26 123.6 155 44.5
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 1.7e-26 123.2 165 41.8
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.3e-26 122.9 157 42.0
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 3.0e-26 122.5 156 43.6
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.9e-26 122.1 158 42.4
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 5.1e-26 121.7 81 69.1
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 5.1e-26 121.7 111 52.3
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.1e-26 121.7 79 65.8
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 6.6e-26 121.3 153 46.4
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 8.6e-26 120.9 160 45.6
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.1e-25 120.6 155 43.2
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.1e-25 120.6 155 43.2
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 1.1e-25 120.6 154 44.8
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 1.5e-25 120.2 153 45.8
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 1.5e-25 120.2 153 45.8
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 4.0e-23 112.1 159 47.2
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 3.4e-22 109.0 81 58.0
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 4.4e-22 108.6 116 49.1
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 1.7e-21 106.7 156 42.3
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.1e-20 104.0 158 39.9
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.7e-18 96.7 91 52.7
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 5.1e-18 95.1 80 58.8
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 2.8e-16 89.4 160 37.5
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.0e-15 85.5 77 50.6
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 7.6e-14 81.3 80 50.0
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 9.9e-14 80.9 81 43.2
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.7e-13 80.1 101 45.5
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 6.4e-13 78.2 88 47.7
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.9e-12 76.6 144 36.1
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 3.0e-10 69.3 44 68.2
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 3.9e-10 68.9 105 37.1
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 6.6e-10 68.2 93 39.8
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 1.1e-09 67.4 86 57.0
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.5e-09 67.0 79 50.6
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 8.1e-08 61.2 40 67.5


User provided reference genes

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