Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 0.0e+00 1924.8 1123 100.0
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 6.4e-200 702.2 1213 48.0
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.3e-165 587.4 1218 37.8
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 1.8e-162 577.8 1227 44.4
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.4e-162 577.4 1258 43.2
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.5e-161 574.7 1213 44.9
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 3.0e-157 560.5 1234 43.0
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 6.7e-157 559.3 1228 43.1
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 2.6e-156 557.4 1210 41.7
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.3e-156 557.0 1208 42.1
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 8.2e-155 552.4 1261 43.1
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 3.1e-154 550.4 1223 43.6
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 9.1e-154 548.9 1217 43.5
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 2.6e-153 547.4 1096 46.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.0e-152 545.4 1259 41.7
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 2.2e-152 544.3 1261 43.3
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.9e-149 533.5 1266 38.9
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.1e-148 531.9 1232 41.6
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.6e-148 530.8 1223 43.4
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 5.3e-146 523.1 1208 39.9
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 3.5e-145 520.4 1264 38.9
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.5e-143 515.0 1210 42.4
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 4.7e-142 510.0 1244 42.7
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.2e-140 505.4 1242 38.4
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 2.2e-139 501.1 1020 39.2
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 3.8e-136 490.3 1255 39.6
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.1e-135 488.8 1170 43.2
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 4.7e-134 483.4 1027 41.2
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.2e-132 478.8 1272 40.6
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.5e-132 478.4 1260 39.6
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 2.7e-129 467.6 1235 37.8
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.6e-128 462.6 1227 40.7
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.5e-127 461.8 822 40.5
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 7.2e-127 459.5 1107 42.5
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 7.5e-124 449.5 1073 34.8
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.4e-122 444.5 1246 37.4
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 2.4e-122 444.5 1230 37.5
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.7e-120 438.3 1255 34.7
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.5e-119 434.5 1261 38.8
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.0e-117 429.1 1237 35.2
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.8e-117 426.4 1258 39.7
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 1.2e-116 425.6 1299 39.3
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 3.4e-116 424.1 1258 39.0
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 5.7e-116 423.3 1274 33.5
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 1.3e-115 422.2 1284 33.5
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.9e-115 421.0 1259 39.1
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 3.7e-115 420.6 1255 38.6
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.4e-114 418.7 1290 33.3
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.4e-114 418.7 1259 38.9
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 2.0e-113 414.8 1213 36.5
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 3.5e-113 414.1 1090 39.4
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.3e-112 412.1 1227 32.1
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 3.3e-111 407.5 1151 38.3
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.3e-111 407.1 1269 39.2
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.1e-109 401.0 1276 37.1
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 4.4e-108 397.1 1210 34.7
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 8.3e-107 392.9 1227 36.4
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.1e-106 392.5 1239 36.2
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 3.2e-106 391.0 1329 31.3
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.3e-104 385.6 1084 37.8
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.7e-102 377.1 1040 39.3
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 4.0e-101 374.0 834 35.0
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.9e-101 372.9 1251 31.1
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.6e-100 371.3 580 39.8
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.1e-98 365.9 1235 35.0
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.2e-97 362.5 1093 36.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.9e-96 357.5 1330 32.9
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.3e-95 354.4 1242 34.7
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.6e-94 352.1 496 42.9
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.6e-94 350.9 723 35.8
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 4.0e-93 347.4 1235 34.8
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 2.9e-91 341.3 794 31.7
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 3.8e-91 340.9 1242 36.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 3.8e-91 340.9 1005 35.3
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 3.2e-90 337.8 1060 38.6
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 3.2e-90 337.8 1249 36.4
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 6.0e-89 333.6 1097 37.6
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.0e-88 332.8 1252 31.9
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.4e-85 322.4 1102 37.4
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.9e-85 320.1 790 33.7
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 9.0e-85 319.7 759 34.4
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.6e-84 316.6 465 41.5
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 9.9e-84 316.2 786 33.7
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 2.4e-82 311.6 1268 30.0
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 5.4e-82 310.5 1264 34.7
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 9.3e-82 309.7 825 33.8
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.0e-80 306.2 1034 38.7
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 2.3e-80 305.1 704 35.7
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 6.6e-80 303.5 1235 35.1
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.9e-79 302.0 683 33.8
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.3e-79 301.2 605 36.0
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 3.3e-79 301.2 602 37.7
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 3.6e-78 297.7 1350 34.1
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.8e-78 297.4 1208 32.9
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 6.2e-78 297.0 852 33.9
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 3.1e-77 294.7 572 36.9
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 4.0e-77 294.3 1124 33.2
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 2.0e-76 292.0 688 33.9
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.3e-75 289.3 770 34.2
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.2e-74 284.6 820 33.2
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 4.2e-74 284.3 690 32.9
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 7.1e-74 283.5 647 34.2
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 9.3e-74 283.1 1237 29.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.2e-73 282.7 989 31.4
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 7.9e-73 280.0 605 36.4
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.3e-72 279.3 1121 34.9
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.3e-72 278.5 1186 30.9
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 3.3e-71 274.6 792 32.7
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 9.6e-71 273.1 1098 36.7
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 8.1e-70 270.0 1316 32.1
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 6.9e-69 266.9 703 33.7
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 6.9e-69 266.9 703 33.7
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 9.0e-69 266.5 809 31.5
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 2.6e-68 265.0 452 39.8
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 4.5e-68 264.2 1064 29.2
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.2e-67 261.9 902 30.4
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 7.1e-66 256.9 1139 34.2
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 6.0e-65 253.8 674 32.0
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 6.0e-65 253.8 999 32.3
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.1e-63 249.6 670 31.0
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 4.3e-63 247.7 1207 30.2
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 6.2e-62 243.8 1185 33.6
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.6e-60 238.4 1242 32.9
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.3e-59 236.1 1125 34.1
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 4.9e-59 234.2 1224 28.3
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 3.2e-58 231.5 1331 30.6
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.6e-57 229.2 813 30.4
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.9e-57 226.9 770 29.2
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 5.7e-55 220.7 1295 32.6
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.6e-54 219.2 998 27.6
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.8e-54 218.4 1039 28.7
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.7e-51 209.1 1339 28.6
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.6e-49 202.6 420 35.5
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 2.3e-48 198.7 774 28.4
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 6.7e-48 197.2 1367 27.9
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.4e-45 188.7 780 27.9
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 9.4e-42 176.8 1203 30.4
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 7.9e-41 173.7 399 32.6
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.6e-39 168.7 837 26.9
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 4.8e-38 164.5 730 27.3
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.5e-36 159.5 609 29.1
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 6.1e-33 147.5 1194 29.0
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.8e-32 146.0 599 27.4
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 2.3e-32 145.6 1076 24.2
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.7e-30 139.4 608 27.1
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.6e-28 132.9 605 28.6
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 4.2e-26 124.8 1059 22.9
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.2e-23 116.7 1019 22.8
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.1e-21 110.2 306 30.1
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.3e-19 103.2 517 26.5
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.2e-19 102.4 976 28.0
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.1e-18 100.1 835 22.9
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 4.2e-18 98.2 622 24.4
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.6e-15 89.0 684 25.3
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.3e-14 86.7 106 48.1
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 8.3e-14 84.0 1025 29.3
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.5e-10 73.2 237 35.0
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 8.0e-09 67.4 270 30.0
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.8e-08 66.2 478 32.6
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.0e-08 65.5 89 37.1
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.0e-08 65.5 89 37.1
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 5.2e-08 64.7 683 24.2
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 9.8e-07 60.5 126 38.1
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 9.8e-07 60.5 126 38.1
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 6.3e-06 57.8 87 42.5


User provided reference genes

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