Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 6.4e-241 837.0 432 100.0
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 2.8e-151 539.3 434 70.7
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 1.4e-150 537.0 432 67.8
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.4e-150 537.0 431 67.7
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.8e-150 536.6 431 68.0
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 5.8e-149 531.6 417 68.6
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 2.2e-148 529.6 440 67.7
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 2.9e-148 529.3 438 67.6
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 2.9e-148 529.3 421 66.3
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 4.9e-148 528.5 457 66.5
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 6.4e-148 528.1 435 66.0
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 8.3e-148 527.7 433 65.6
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.1e-147 527.3 433 65.6
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 1.1e-147 527.3 351 76.1
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 2.4e-147 526.2 358 74.6
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 7.0e-147 524.6 351 75.5
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 7.0e-147 524.6 367 74.7
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 7.0e-147 524.6 352 75.6
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 2.1e-146 523.1 430 66.0
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 2.1e-146 523.1 343 76.7
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 6.0e-146 521.5 351 76.1
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 7.8e-146 521.2 348 77.0
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 1.3e-145 520.4 422 65.9
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 3.0e-145 519.2 372 71.8
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 3.0e-145 519.2 372 71.8
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.5e-144 516.2 428 67.1
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.5e-144 516.2 423 66.2
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 4.3e-144 515.4 434 65.4
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 5.6e-144 515.0 437 64.3
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 3.6e-143 512.3 406 67.0
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.7e-143 511.9 439 65.4
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 4.7e-143 511.9 405 66.9
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 8.1e-143 511.1 363 74.9
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 8.1e-143 511.1 420 66.0
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 1.8e-142 510.0 433 64.9
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 1.8e-142 510.0 366 71.3
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.8e-142 508.1 370 72.4
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 8.9e-142 507.7 421 65.3
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.6e-141 506.1 433 63.3
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 7.5e-141 504.6 427 64.6
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 2.9e-140 502.7 343 74.1
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 4.9e-140 501.9 429 64.1
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 8.3e-140 501.1 347 74.6
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 1.1e-139 500.7 350 73.7
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 2.4e-139 499.6 354 72.6
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 2.4e-139 499.6 354 72.6
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.2e-138 497.3 343 73.2
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 1.2e-138 497.3 421 65.6
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 6.0e-138 495.0 348 73.3
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 6.6e-137 491.5 431 61.9
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 1.5e-136 490.3 364 69.2
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 2.1e-135 486.5 358 67.6
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 2.1e-135 486.5 358 67.6
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 2.1e-135 486.5 432 61.3
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.8e-135 486.1 394 65.0
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 4.7e-135 485.3 351 68.7
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 6.2e-135 485.0 407 64.4
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.4e-134 483.8 436 62.8
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.8e-134 483.4 359 66.9
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 4.0e-134 482.3 358 66.8
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 4.0e-134 482.3 351 71.8
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 8.9e-134 481.1 358 66.5
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.3e-132 477.2 362 68.0
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 1.3e-132 477.2 544 52.8
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.7e-132 476.9 350 68.0
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.1e-131 474.2 393 64.4
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 2.4e-131 473.0 359 67.1
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.2e-131 472.6 379 64.6
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 4.2e-131 472.2 545 53.4
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.6e-130 470.3 380 63.9
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 2.1e-130 469.9 359 67.1
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 2.1e-130 469.9 359 67.7
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 2.1e-130 469.9 359 66.9
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 6.0e-130 468.4 351 66.7
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 7.8e-130 468.0 291 79.0
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 1.0e-129 467.6 343 70.6
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.3e-129 467.2 436 59.9
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.5e-128 463.0 430 58.1
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 4.3e-128 462.2 345 68.1
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.1e-126 457.6 371 65.5
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 9.9e-125 451.1 441 56.9
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.7e-124 450.3 344 66.0
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 2.2e-124 449.9 344 66.0
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 3.8e-124 449.1 467 58.5
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 4.9e-124 448.7 344 65.7
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 4.9e-124 448.7 344 65.7
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 1.1e-123 447.6 424 59.4
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 4.2e-123 445.7 344 64.8
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 2.3e-121 439.9 412 59.7
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 6.6e-121 438.3 355 62.0
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 3.3e-120 436.0 359 61.8
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 4.3e-120 435.6 392 57.9
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 5.6e-120 435.3 402 58.2
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 1.3e-119 434.1 356 62.4
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 7.6e-117 424.9 365 62.5
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 2.2e-116 423.3 365 62.7
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 1.1e-115 421.0 345 64.3
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 4.2e-115 419.1 418 58.9
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 7.1e-115 418.3 363 60.3
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 2.3e-113 413.3 312 67.9
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.7e-111 406.0 382 58.4
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 1.8e-110 403.7 351 64.1
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.8e-109 398.7 313 65.5
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.1e-106 390.2 305 65.2
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 3.9e-105 386.0 239 79.1
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 9.6e-104 381.3 284 65.1
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.3e-103 380.9 228 81.1
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 2.6e-101 373.2 233 78.1
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 6.1e-98 362.1 281 63.7
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.8e-97 360.5 567 41.1
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 6.3e-95 352.1 336 59.5
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 3.1e-94 349.7 286 62.9
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 6.9e-94 348.6 271 63.1
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.2e-90 337.8 243 73.7
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 2.5e-88 330.1 317 62.1
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 3.7e-87 326.2 238 72.7
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 2.2e-84 317.0 215 69.8
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 3.9e-81 306.2 229 67.7
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 7.4e-80 302.0 341 53.1
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-76 291.6 288 52.1
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.3e-76 291.2 227 62.6
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 8.8e-73 278.5 271 61.6
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 1.1e-70 271.6 237 58.2
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 5.2e-41 172.9 268 38.4
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.7e-37 160.6 259 34.4
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 5.4e-30 136.3 286 34.3
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 3.5e-29 133.7 125 60.8
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 1.5e-27 128.3 122 59.8
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 2.1e-26 124.4 130 52.3
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 8.9e-25 119.0 116 60.3
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 9.9e-24 115.5 66 83.3
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 1.7e-23 114.8 260 33.8
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.9e-23 113.2 66 83.3
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.9e-23 113.2 66 83.3
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 8.4e-23 112.5 138 50.7
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-22 110.5 66 78.8
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-22 110.5 66 78.8
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-22 110.5 66 78.8
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 7.1e-22 109.4 138 48.6
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.0e-21 106.3 66 75.8
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 3.9e-20 103.6 101 56.4
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 2.4e-14 84.3 73 60.3
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 1.9e-11 74.7 179 30.7
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.5e-11 74.3 179 29.1
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 5.6e-11 73.2 183 34.4
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 7.3e-11 72.8 267 24.7
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 2.8e-10 70.9 175 32.0
CARHR054100 Cardamine hirsuta HOM05D004930 ORTHO05D006531 9.9e-08 62.4 75 48.0


User provided reference genes

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