Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 3.8e-254 880.9 428 100.0
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 1.5e-165 586.6 370 75.7
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 4.4e-165 585.1 370 75.1
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 1.4e-163 580.1 380 72.4
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 1.7e-161 573.2 372 72.6
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 2.3e-158 562.8 371 71.2
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 6.7e-158 561.2 374 68.7
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 1.1e-157 560.5 372 70.2
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 9.7e-157 557.4 376 69.7
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 4.8e-156 555.1 369 70.5
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 1.4e-155 553.5 376 68.1
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 9.1e-155 550.8 376 69.1
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 5.9e-154 548.1 371 69.0
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 5.9e-154 548.1 376 69.4
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 5.9e-154 548.1 376 67.8
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 1.5e-152 543.5 377 69.2
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 4.2e-152 542.0 395 65.1
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 4.2e-152 542.0 376 66.2
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.2e-152 542.0 389 68.9
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 7.2e-152 541.2 369 70.5
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 9.4e-152 540.8 372 70.2
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 2.1e-151 539.7 373 67.8
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 2.1e-151 539.7 386 64.5
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 2.7e-151 539.3 376 68.1
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 1.0e-150 537.3 378 67.7
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 1.4e-150 537.0 371 69.3
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 1.4e-150 537.0 373 65.1
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 5.2e-150 535.0 373 64.9
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 8.8e-150 534.3 371 68.7
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 8.8e-150 534.3 373 64.9
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 1.5e-149 533.5 371 69.8
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.4e-149 531.9 372 69.1
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 1.3e-148 530.4 376 64.9
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 3.7e-148 528.9 373 65.1
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 6.3e-148 528.1 375 65.1
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 1.8e-147 526.6 375 64.8
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 3.1e-147 525.8 375 64.5
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 9.1e-147 524.2 375 66.9
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 1.2e-146 523.9 376 64.9
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 5.9e-146 521.5 375 66.4
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 1.0e-145 520.8 365 67.4
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 2.2e-145 519.6 377 65.5
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 2.9e-145 519.2 372 66.7
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 3.8e-145 518.8 373 64.9
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 5.0e-145 518.5 374 65.2
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 2.5e-144 516.2 374 65.5
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 3.2e-144 515.8 373 65.1
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 5.5e-144 515.0 378 65.9
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 1.4e-142 510.4 375 65.1
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 1.8e-142 510.0 379 64.4
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.8e-142 510.0 382 62.8
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.8e-142 510.0 374 63.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 2.8e-140 502.7 370 65.4
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 2.8e-140 502.7 363 63.9
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 3.5e-138 495.7 374 63.1
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 5.9e-138 495.0 351 67.0
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.0e-137 494.2 368 64.9
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 5.0e-137 491.9 371 65.5
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.1e-136 490.7 385 62.9
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 7.2e-136 488.0 378 65.6
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 2.1e-135 486.5 358 65.1
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.1e-135 486.5 358 65.6
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 6.1e-135 485.0 375 62.9
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 5.2e-134 481.9 397 60.5
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 5.7e-133 478.4 395 59.0
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 7.5e-133 478.0 372 61.0
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 2.8e-132 476.1 369 60.7
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 4.9e-132 475.3 360 64.2
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 4.9e-132 475.3 373 60.9
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 1.2e-130 470.7 374 59.6
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 1.0e-129 467.6 385 58.4
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 2.9e-129 466.1 385 58.7
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 2.8e-127 459.5 371 59.8
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 1.0e-126 457.6 372 59.1
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 1.2e-125 454.1 360 60.8
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 3.7e-124 449.1 405 57.8
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 1.9e-120 436.8 399 56.6
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 2.5e-120 436.4 369 56.4
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 4.0e-110 402.5 252 72.2
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 5.6e-104 382.1 345 55.1
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 4.0e-102 375.9 314 59.9
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 5.8e-101 372.1 375 48.3
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 3.4e-93 346.3 393 48.1
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 3.2e-91 339.7 365 52.3
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 1.8e-81 307.4 309 50.2
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 1.5e-77 294.3 200 68.0
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 2.0e-77 293.9 380 41.3
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 1.3e-76 291.2 375 42.4
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.1e-71 273.9 223 62.3
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 1.7e-68 264.2 315 42.5
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 2.5e-67 260.4 371 38.3
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 7.1e-67 258.8 208 63.0
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 1.6e-63 247.7 208 59.1
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 1.7e-60 237.7 220 54.1
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 3.8e-60 236.5 187 65.8
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 5.5e-59 232.6 146 68.5
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 4.6e-58 229.6 250 49.6
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 1.8e-57 227.6 187 61.0
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 6.7e-57 225.7 187 60.4
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 4.3e-56 223.0 233 51.5
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 1.4e-54 218.0 403 33.3
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 7.7e-53 212.2 208 54.3
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 7.7e-53 212.2 208 54.3
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 3.6e-50 203.4 180 58.3
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 2.9e-44 183.7 126 64.3
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 1.2e-42 178.3 151 57.6
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 8.0e-42 175.6 100 77.0
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 1.8e-41 174.5 146 61.0
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 3.0e-41 173.7 149 55.7
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 2.0e-40 171.0 122 62.3
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 1.8e-38 164.5 140 57.1
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 3.1e-38 163.7 264 37.5
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 6.3e-31 139.4 173 45.1
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 4.0e-25 120.2 100 50.0
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 8.3e-23 112.5 78 64.1
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 1.4e-22 111.7 239 29.3
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.6e-21 108.2 88 60.2
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 1.7e-20 104.8 490 22.4
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.4e-17 95.1 65 69.2
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 2.3e-17 94.4 79 55.7
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 1.3e-15 88.6 161 40.4
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 1.7e-15 88.2 114 47.4
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.1e-14 83.6 177 36.7
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 3.4e-08 63.9 80 43.8
arahy.Tifrunner.gnm1.ann1.PN7KIB Arachis hypogaea HOM05D006665 ORTHO05D018494 8.3e-07 59.3 32 75.0


User provided reference genes

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