Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 1.2e-153 546.6 294 100.0
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 9.9e-76 287.7 287 58.5
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 9.2e-74 281.2 248 60.1
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 4.6e-73 278.9 287 55.1
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 1.3e-72 277.3 296 54.7
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 2.1e-70 270.0 290 52.8
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 8.9e-69 264.6 248 58.1
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 8.9e-69 264.6 292 52.4
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 4.9e-67 258.8 268 51.9
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 1.9e-63 246.9 233 57.1
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 6.2e-62 241.9 292 48.3
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 3.1e-61 239.6 299 45.2
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 5.3e-61 238.8 284 47.5
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 2.0e-60 236.9 286 51.0
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 9.9e-60 234.6 252 52.4
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 1.7e-59 233.8 284 47.9
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 2.2e-59 233.4 295 46.4
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 2.2e-59 233.4 284 46.8
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 4.2e-58 229.2 248 50.8
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 7.1e-58 228.4 291 48.8
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 1.6e-57 227.3 290 45.9
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 3.5e-57 226.1 283 44.9
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 4.6e-57 225.7 287 45.3
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 6.0e-57 225.3 286 46.2
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 1.0e-56 224.6 273 50.5
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 1.0e-56 224.6 284 44.4
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.3e-56 224.2 248 48.8
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 2.3e-56 223.4 248 48.8
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 3.9e-56 222.6 287 48.4
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 3.9e-56 222.6 299 45.8
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 3.9e-56 222.6 248 49.6
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 3.9e-56 222.6 248 49.6
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 8.7e-56 221.5 283 49.1
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 3.3e-55 219.5 285 44.9
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 5.6e-55 218.8 284 46.1
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 6.2e-54 215.3 293 43.7
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 1.8e-53 213.8 216 52.3
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 3.1e-53 213.0 273 42.9
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 5.3e-53 212.2 290 43.4
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 5.3e-53 212.2 272 44.5
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 5.3e-53 212.2 286 43.4
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 3.4e-52 209.5 248 46.4
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.9e-51 206.5 246 47.2
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 1.1e-50 204.5 296 43.9
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 7.9e-49 198.4 292 45.2
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 3.9e-48 196.1 294 41.5
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 1.1e-47 194.5 277 41.5
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 2.5e-47 193.4 284 41.9
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 7.4e-47 191.8 287 39.4
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 9.6e-47 191.4 245 46.9
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 1.3e-46 191.0 295 42.7
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 3.7e-46 189.5 288 41.7
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 8.1e-46 188.3 297 40.7
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 1.1e-45 188.0 290 40.0
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 3.1e-45 186.4 180 55.6
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 1.2e-44 184.5 278 41.0
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 1.2e-44 184.5 248 43.1
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 2.2e-43 180.3 184 48.9
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 8.4e-43 178.3 175 53.7
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 1.1e-42 177.9 239 43.1
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 1.1e-42 177.9 279 38.0
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 1.4e-42 177.6 192 49.0
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.4e-42 177.6 275 41.5
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 1.9e-42 177.2 291 36.8
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 2.5e-42 176.8 265 38.9
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 2.5e-42 176.8 291 39.9
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 1.2e-41 174.5 184 48.4
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 2.1e-41 173.7 269 40.9
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 3.0e-40 169.9 268 39.6
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 1.9e-39 167.2 237 41.8
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 4.3e-39 166.0 236 40.3
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 7.4e-39 165.2 295 36.9
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 2.8e-38 163.3 288 37.2
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 4.8e-38 162.5 251 39.4
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 1.4e-37 161.0 258 36.8
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 7.6e-36 155.2 189 47.1
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 3.8e-35 152.9 220 43.6
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 2.5e-34 150.2 253 39.5
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 1.2e-33 147.9 296 35.1
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 2.1e-33 147.1 244 39.3
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 2.1e-33 147.1 244 39.3
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.7e-33 146.7 204 39.7
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 2.7e-33 146.7 274 36.5
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 1.1e-31 141.4 236 36.4
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 3.3e-31 139.8 236 35.2
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 5.7e-31 139.0 234 36.3
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 9.7e-31 138.3 244 35.2
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 2.8e-30 136.7 216 36.1
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 4.8e-30 136.0 296 32.8
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 6.9e-29 132.1 172 45.3
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 1.7e-22 110.9 259 31.7
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 2.8e-22 110.2 218 33.5
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 4.1e-21 106.3 133 41.4
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 9.4e-18 95.1 202 33.7
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 3.0e-16 90.1 239 29.7
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.5e-15 87.8 124 42.7
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 9.7e-15 85.1 225 29.3
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 7.0e-13 79.0 96 44.8
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 7.0e-13 79.0 305 24.6
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.0e-12 77.4 68 54.4
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.0e-12 77.4 68 54.4
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 4.5e-12 76.3 67 55.2
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 3.6e-09 66.6 251 27.1
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 9.7e-07 58.5 64 42.2
CDE02G3722 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 2.8e-06 57.0 191 28.8


User provided reference genes

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