Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 8.3e-169 597.0 322 100.0
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.7e-127 459.1 324 75.0
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.8e-123 446.4 259 84.2
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 9.0e-123 444.1 321 72.0
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 7.6e-122 441.0 244 87.3
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 7.6e-122 441.0 244 87.3
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.1e-120 437.2 246 85.4
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.9e-120 436.4 238 88.2
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.9e-120 436.4 249 85.5
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.9e-120 436.4 318 73.6
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-120 435.6 246 86.2
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.2e-120 435.6 246 86.2
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 7.2e-120 434.5 242 86.0
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.3e-120 434.1 246 85.8
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 1.2e-119 433.7 259 81.1
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.1e-119 433.0 242 86.0
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.1e-119 433.0 313 71.2
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 2.7e-119 432.6 301 74.1
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 6.1e-119 431.4 249 84.7
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 6.1e-119 431.4 242 86.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 7.9e-119 431.0 242 86.4
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.0e-118 430.6 242 85.5
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.3e-118 430.3 246 83.3
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.8e-118 429.9 316 70.3
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.8e-118 429.9 246 83.7
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.8e-118 429.9 308 71.4
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.0e-118 429.1 245 84.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.0e-118 429.1 242 86.0
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.9e-118 428.7 329 68.1
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 5.1e-118 428.3 242 85.1
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 5.1e-118 428.3 246 84.1
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 8.7e-118 427.6 245 83.3
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 8.7e-118 427.6 241 85.9
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.5e-117 426.8 252 81.3
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.5e-117 426.8 292 74.0
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.5e-117 426.8 327 67.3
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.5e-117 426.8 242 84.7
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.3e-117 425.6 314 70.1
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 4.3e-117 425.2 255 80.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 4.3e-117 425.2 258 79.5
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 5.7e-117 424.9 252 81.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 5.7e-117 424.9 321 68.2
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.7e-117 424.9 245 82.4
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 5.7e-117 424.9 242 84.7
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.2e-116 422.9 243 83.1
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.2e-116 422.9 242 83.5
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.7e-116 422.2 327 66.4
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.7e-116 422.2 251 81.3
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 4.8e-116 421.8 248 82.3
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 6.3e-116 421.4 246 82.5
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.1e-115 420.6 246 79.3
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.1e-115 420.6 242 83.9
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.1e-115 420.6 243 82.7
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.4e-115 419.5 249 80.7
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.1e-115 419.1 255 79.6
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 3.1e-115 419.1 247 80.6
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 4.1e-115 418.7 317 68.1
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 5.3e-115 418.3 242 83.1
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 6.9e-115 417.9 246 82.1
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.2e-114 417.2 241 83.0
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.5e-114 416.8 263 77.9
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.0e-114 416.4 242 83.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.0e-114 416.4 246 82.9
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.6e-114 416.0 244 79.9
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.6e-114 416.0 247 80.2
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.0e-113 414.1 242 83.1
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.3e-113 413.7 298 70.5
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.9e-113 412.5 242 81.4
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.8e-113 412.1 245 80.4
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.0e-113 411.8 261 79.3
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.5e-113 411.4 316 66.5
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.1e-112 410.6 247 78.9
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 3.2e-112 409.1 249 79.1
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 4.2e-112 408.7 260 75.4
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.2e-111 407.1 242 81.8
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.2e-111 407.1 293 70.0
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.7e-111 406.0 250 78.8
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.7e-111 406.0 246 80.5
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.0e-110 404.1 245 78.4
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 3.0e-110 402.5 244 78.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.5e-109 400.2 245 78.0
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.3e-109 399.1 250 77.6
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 3.3e-109 399.1 279 72.0
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.3e-108 397.1 247 78.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.7e-108 396.7 242 78.1
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.2e-108 396.4 416 55.0
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 4.8e-108 395.2 245 76.3
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 5.3e-107 391.7 245 75.5
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 6.9e-107 391.3 250 75.2
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 9.1e-107 391.0 264 72.0
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.3e-105 387.1 311 65.9
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 4.2e-104 382.1 247 73.7
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.6e-103 380.2 260 74.2
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.6e-103 379.0 234 81.2
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.8e-102 376.7 246 76.4
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 2.3e-102 376.3 212 84.9
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.0e-101 373.2 245 75.5
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.2e-98 364.0 219 80.8
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.2e-96 355.9 212 78.8
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 5.5e-96 355.1 458 48.9
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-94 350.5 241 71.8
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 2.3e-94 349.7 320 64.1
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.0e-94 349.4 249 71.9
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 5.2e-94 348.6 279 62.4
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.0e-93 346.7 249 70.3
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 4.8e-92 342.0 247 64.4
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 8.2e-92 341.3 216 79.2
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 2.0e-90 336.7 246 62.6
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 3.8e-89 332.4 212 76.4
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.0e-81 307.8 186 80.6
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.7e-81 307.0 232 69.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.4e-75 286.6 167 83.8
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 5.4e-75 285.4 259 52.5
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.5e-74 282.3 216 63.0
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.5e-69 267.3 179 74.9
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 2.9e-68 263.1 167 77.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.8e-67 260.4 250 54.4
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 2.4e-67 260.0 159 78.6
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 4.1e-67 259.2 258 48.8
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 9.2e-67 258.1 226 62.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 4.3e-64 249.2 145 83.4
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 5.8e-61 238.8 251 55.0
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 8.3e-60 235.0 192 64.1
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.1e-59 232.6 138 84.1
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 7.0e-59 231.9 206 62.6
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.7e-58 229.9 237 44.7
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.7e-57 227.3 138 78.3
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 3.1e-54 216.5 138 76.1
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 2.4e-51 206.8 238 44.5
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.1e-51 206.1 130 79.2
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.0e-49 201.4 127 76.4
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.3e-49 200.3 167 60.5
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.3e-48 196.4 112 82.1
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.2e-47 192.2 111 80.2
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 6.8e-46 188.7 136 70.6
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 6.8e-46 188.7 136 70.6
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 2.2e-44 183.7 110 80.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 8.4e-44 181.8 101 82.2
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.9e-43 180.6 232 40.9
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.5e-42 176.4 101 78.2
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 2.3e-41 173.7 164 58.5
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.6e-40 169.1 92 85.9
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.4e-38 163.7 105 70.5
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 2.6e-37 160.2 223 40.8
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 6.4e-36 155.6 80 90.0
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.4e-35 154.5 239 38.5
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.5e-34 149.8 82 82.9
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 1.3e-31 141.4 76 85.5
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.8e-30 137.5 146 51.4
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 4.5e-29 132.9 74 77.0
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 8.4e-28 128.6 66 86.4
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.1e-24 118.2 63 87.3
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.3e-23 114.8 245 31.8
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.1e-22 111.7 56 87.5
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 4.5e-21 106.3 82 63.4
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.8e-20 103.2 62 72.6
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 1.2e-18 98.2 48 87.5
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 3.9e-17 93.2 59 72.9
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 5.1e-17 92.8 48 81.2
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 4.0e-14 83.2 48 79.2
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 9.0e-14 82.0 59 55.9
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.0e-13 80.9 114 41.2
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 4.6e-10 69.7 102 39.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 6.7e-09 65.9 45 66.7
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 2.4e-06 57.4 74 41.9


User provided reference genes

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