Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.6e-136 488.8 262 100.0
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.4e-134 482.3 262 98.9
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 6.4e-127 457.6 262 92.4
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.1e-126 456.8 262 93.1
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 1.1e-126 456.8 262 92.4
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.5e-125 451.8 262 91.6
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 7.8e-125 450.7 262 90.8
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.9e-124 448.4 262 91.2
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.5e-123 445.7 262 89.7
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.5e-123 445.7 262 89.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 2.5e-123 445.7 262 89.7
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 5.6e-123 444.5 262 89.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 7.3e-123 444.1 262 89.3
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 9.6e-123 443.7 262 90.5
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.6e-123 443.7 262 89.7
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.6e-123 443.7 262 89.7
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 9.6e-123 443.7 262 89.7
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 90.1
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 89.3
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 89.3
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.8e-122 442.2 262 90.1
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 89.3
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 88.5
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 89.3
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.0e-120 436.0 259 90.0
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 87.4
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 86.6
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 88.2
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 88.5
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 88.2
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 88.5
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 87.8
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 87.8
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 87.0
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 4.9e-119 431.4 261 87.0
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 87.4
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 87.4
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 88.9
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 86.6
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 85.9
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 87.0
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 87.4
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 87.4
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 4.2e-118 428.3 262 87.4
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.5
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 9.3e-118 427.2 263 86.7
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.2e-117 426.8 262 85.1
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 85.5
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.5
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 86.6
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 2.7e-117 425.6 263 86.3
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 84.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 84.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 86.3
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.4
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.0
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 85.9
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.4
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 84.4
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 85.1
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 2.3e-116 422.5 263 85.6
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.7
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 85.9
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.7
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 83.6
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 84.7
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 83.6
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 85.1
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 85.9
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 84.0
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 4.3e-115 418.3 263 84.8
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 82.8
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 84.0
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 84.0
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 84.4
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.7e-114 415.2 262 84.0
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 82.4
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 83.6
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 83.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 83.6
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.1e-114 414.1 264 83.7
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 83.6
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 6.9e-113 411.0 262 83.2
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 9.0e-113 410.6 260 85.0
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 4.5e-112 408.3 262 84.0
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 4.5e-112 408.3 264 83.0
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 9.9e-112 407.1 247 88.7
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 9.9e-112 407.1 264 82.6
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.9e-111 405.6 252 82.9
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 80.5
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 6.4e-111 404.4 262 82.8
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 6.4e-111 404.4 262 82.1
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.1e-110 403.7 247 87.0
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.9e-110 402.9 262 81.7
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 4.2e-110 401.7 263 81.0
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 82.1
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.7e-109 399.1 255 83.5
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.0e-108 397.1 263 81.4
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 6.7e-108 394.4 263 82.9
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 8.7e-108 394.0 262 79.4
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 78.6
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.0
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.0
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.0
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.0
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 3.3e-107 392.1 263 82.1
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 79.0
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 79.0
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 5.6e-107 391.3 262 79.4
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 5.6e-107 391.3 263 82.1
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 79.0
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.6
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.6
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 79.0
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 79.8
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 2.8e-106 389.0 262 78.6
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 78.6
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 78.6
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 6.2e-106 387.9 262 78.2
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 78.2
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.1e-105 387.1 270 77.4
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.0 263 78.3
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.4e-105 386.0 263 78.3
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.4e-105 386.0 263 78.3
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.0e-103 380.6 263 81.0
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.3e-103 380.2 263 81.0
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 3.8e-103 378.6 270 75.2
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 7.1e-102 374.4 248 81.5
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 7.1e-102 374.4 263 79.1
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 7.1e-102 374.4 264 78.8
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.1e-99 367.1 262 76.3
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 6.3e-98 361.3 218 87.6
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.8e-97 359.8 262 75.6
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.8e-97 359.8 249 75.9
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 5.0e-95 351.7 242 79.8
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.5e-95 351.3 234 78.6
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 2.5e-94 349.4 210 86.7
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.4e-92 343.6 262 73.7
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.3e-92 342.8 250 72.0
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 3.0e-92 342.4 214 85.0
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 6.7e-92 341.3 226 78.3
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.4e-89 332.8 219 77.2
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.3e-89 331.6 263 67.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.2e-87 326.2 219 78.1
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.8e-81 306.6 267 62.9
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 7.0e-81 304.7 225 70.7
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.6e-80 302.8 251 68.9
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.5e-80 302.0 247 70.4
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.7e-77 292.0 228 64.5
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.0e-76 290.8 204 77.9
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 3.3e-75 285.8 250 65.6
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.7e-74 283.5 208 71.2
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 5.0e-71 271.9 263 61.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.5e-70 270.4 262 63.0
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.7e-69 266.2 270 57.0
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.1e-65 254.2 209 65.1
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.5e-62 241.9 235 63.8
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 7.7e-56 221.5 244 51.2
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.1e-54 217.6 130 83.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 4.7e-53 212.2 120 90.8
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.2e-51 207.6 246 50.4
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 5.4e-49 198.7 138 78.3
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.8e-45 186.4 179 60.3
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.0e-44 182.6 118 83.1
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 5.8e-35 152.1 127 66.1
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.7e-34 149.4 191 49.7
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.8e-28 130.6 96 70.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 2.1e-24 117.1 69 89.9


User provided reference genes

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