Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 1.7e-188 662.5 338 100.0
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 9.7e-144 513.8 332 75.3
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 2.4e-142 509.2 338 75.7
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 7.0e-142 507.7 338 75.7
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 2.2e-140 502.7 339 74.9
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 2.5e-139 499.2 343 74.3
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 3.2e-139 498.8 342 74.9
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 2.7e-138 495.7 340 74.1
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 4.7e-138 495.0 340 72.6
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 6.1e-138 494.6 339 73.7
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 8.0e-138 494.2 338 74.6
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 9.8e-136 487.3 343 72.3
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 3.7e-135 485.3 349 72.5
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 2.4e-134 482.6 339 71.1
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 2.4e-134 482.6 336 70.8
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 9.1e-134 480.7 338 70.7
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 4.5e-133 478.4 333 72.4
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 8.5e-132 474.2 333 72.4
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 8.5e-132 474.2 338 70.1
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 2.5e-131 472.6 333 72.1
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 8.0e-130 467.6 371 65.2
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 1.8e-129 466.5 343 68.5
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 2.3e-129 466.1 343 68.5
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 2.3e-129 466.1 343 69.1
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 3.0e-129 465.7 343 68.5
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 8.8e-129 464.2 343 67.9
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 3.4e-128 462.2 351 68.4
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 5.7e-128 461.5 334 70.1
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.3e-127 460.3 334 71.6
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 1.7e-127 459.9 341 68.0
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.4e-126 456.8 338 68.6
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.4e-126 456.8 330 70.3
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 2.4e-126 456.1 340 69.4
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 2.4e-126 456.1 335 69.3
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 2.4e-126 456.1 304 72.7
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 3.1e-126 455.7 340 69.1
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 5.4e-126 454.9 335 69.0
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 7.0e-126 454.5 340 69.4
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 7.0e-126 454.5 340 69.4
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 1.2e-125 453.8 338 69.2
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 1.6e-125 453.4 335 67.8
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 2.0e-125 453.0 337 68.5
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 4.5e-125 451.8 339 69.0
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 3.8e-124 448.7 346 66.8
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 1.1e-123 447.2 344 68.0
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 1.9e-123 446.4 335 67.5
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 3.3e-123 445.7 339 65.8
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 4.3e-123 445.3 337 67.4
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 5.6e-123 444.9 336 67.0
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 7.3e-123 444.5 326 69.9
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 9.5e-123 444.1 369 61.0
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.2e-122 443.7 343 66.8
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 2.1e-122 443.0 344 64.8
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 1.8e-121 439.9 319 70.5
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 3.0e-121 439.1 337 68.0
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 5.2e-121 438.3 340 65.6
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 8.9e-121 437.6 332 67.2
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 1.2e-120 437.2 351 63.8
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.6e-120 436.0 326 67.2
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 3.4e-120 435.6 327 68.5
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 2.2e-119 433.0 340 64.7
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 3.7e-119 432.2 333 64.9
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 1.4e-118 430.3 341 66.0
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 3.2e-118 429.1 335 67.8
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.0e-117 426.4 352 63.9
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 3.5e-117 425.6 343 62.1
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 1.0e-116 424.1 343 61.8
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 5.6e-115 418.3 340 64.4
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 2.1e-114 416.4 371 61.2
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.8e-113 413.3 306 68.6
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 1.8e-113 413.3 300 69.3
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.8e-113 413.3 347 65.1
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.3e-113 412.9 332 65.4
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 4.0e-113 412.1 347 63.1
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 5.2e-113 411.8 322 64.9
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.5e-112 410.2 347 64.6
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 7.5e-112 407.9 347 64.6
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 7.0e-110 401.4 328 63.1
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 7.0e-110 401.4 351 59.8
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 2.0e-109 399.8 309 65.4
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 6.0e-109 398.3 344 64.2
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 2.5e-107 392.9 346 59.8
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 9.5e-107 391.0 275 71.6
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 4.4e-104 382.1 265 72.1
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.5e-101 372.5 346 60.1
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 6.0e-101 371.7 303 65.0
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 1.6e-98 363.6 335 61.2
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 1.8e-97 360.1 272 68.4
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 9.2e-94 347.8 348 56.0
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 1.0e-92 344.4 263 67.7
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 2.3e-92 343.2 331 58.3
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 3.0e-92 342.8 407 48.4
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 4.3e-91 339.0 243 71.6
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 1.2e-90 337.4 233 73.0
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 1.6e-90 337.0 399 48.4
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 2.8e-90 336.3 332 57.2
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 4.0e-89 332.4 234 71.8
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 1.0e-84 317.8 278 61.5
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 5.6e-83 312.0 232 69.0
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 7.6e-80 301.6 302 52.6
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 1.2e-77 294.3 333 49.8
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 2.5e-75 286.6 314 51.0
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 2.9e-71 273.1 184 71.7
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 3.3e-67 259.6 185 71.9
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 6.2e-66 255.4 272 50.0
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 1.3e-63 247.7 245 53.5
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 9.3e-62 241.5 183 65.0
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 2.3e-60 236.9 248 54.0
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 2.5e-59 233.4 333 42.3
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 2.1e-37 160.6 100 80.0
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 2.1e-29 134.0 93 62.4
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 3.3e-27 126.7 99 61.6
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 6.3e-26 122.5 72 80.6
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 1.8e-25 120.9 293 31.4
BraA03t11005Z Brassica rapa HOM05D006699 ORTHO05D008399 1.7e-23 114.4 88 65.9
A03p17330 Brassica napus HOM05D006699 ORTHO05D008399 1.1e-22 111.7 88 65.9
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 5.5e-22 109.4 276 31.5
CDE10G0215 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 2.2e-18 97.4 60 78.3
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 9.1e-17 92.0 77 62.3
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 5.0e-15 86.3 195 31.8
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 1.8e-12 77.8 54 70.4
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 1.8e-12 77.8 54 70.4
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 7.8e-08 62.4 174 29.3
TPR.G33085 Trifolium pratense HOM05D006699 ORTHO05D008399 1.3e-07 61.6 43 67.4
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.1e-06 58.5 167 26.9
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.1e-06 58.5 167 26.9
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 2.5e-06 57.4 167 26.3


User provided reference genes

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