Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 3.7e-114 415.2 218 100.0
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.0e-63 246.1 217 63.1
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 5.1e-63 245.4 218 63.3
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.9e-62 243.4 217 61.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.9e-62 243.4 225 60.4
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.3e-62 242.3 217 64.5
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 5.6e-62 241.9 217 65.4
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 5.6e-62 241.9 216 59.3
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 7.3e-62 241.5 222 63.5
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.3e-61 240.7 220 60.9
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.6e-61 240.4 216 61.1
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 4.8e-61 238.8 218 61.9
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.4e-60 237.3 218 63.8
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 6.9e-60 235.0 212 62.3
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 9.0e-60 234.6 212 60.4
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.2e-59 234.2 217 61.3
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.6e-59 233.0 216 58.8
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 1.3e-58 230.7 216 60.6
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 2.9e-58 229.6 222 59.5
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 3.8e-58 229.2 217 60.4
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 3.8e-58 229.2 223 58.3
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 6.4e-58 228.4 208 64.4
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 1.4e-57 227.3 217 59.9
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.4e-57 227.3 216 60.2
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.9e-57 226.9 245 54.7
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 2.4e-57 226.5 209 60.3
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 3.2e-57 226.1 209 62.2
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 5.4e-57 225.3 222 58.1
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.6e-56 223.8 217 59.0
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.1e-56 223.4 217 59.4
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 2.7e-56 223.0 207 61.8
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.5e-56 222.6 216 60.2
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.6e-56 222.2 217 59.9
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.0e-56 221.9 217 59.4
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 7.9e-56 221.5 219 61.2
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 1.8e-55 220.3 219 59.4
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.8e-55 220.3 217 59.0
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 2.3e-55 219.9 221 59.7
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 5.1e-55 218.8 222 56.8
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 5.1e-55 218.8 222 57.2
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 6.7e-55 218.4 204 62.3
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.1e-54 217.6 211 60.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.1e-54 217.6 218 60.1
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.9e-54 216.9 205 62.0
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 1.9e-54 216.9 225 56.0
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 3.3e-54 216.1 210 59.5
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 3.3e-54 216.1 224 55.8
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 4.3e-54 215.7 224 57.1
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.3e-53 214.2 209 59.8
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 4.8e-53 212.2 221 57.9
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.8e-52 210.3 235 53.2
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 6.9e-52 208.4 207 57.0
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 2.0e-51 206.8 219 53.0
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 2.6e-51 206.5 205 59.5
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 2.6e-51 206.5 255 51.0
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 4.5e-51 205.7 222 55.0
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 4.5e-51 205.7 252 51.6
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 5.8e-51 205.3 226 56.2
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 5.8e-51 205.3 219 58.0
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 7.6e-51 204.9 263 48.3
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 2.2e-50 203.4 220 57.3
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 2.2e-50 203.4 209 53.6
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 2.9e-50 203.0 252 50.4
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.9e-50 202.2 209 56.9
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 4.9e-50 202.2 203 57.1
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 8.4e-50 201.4 222 55.0
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.1e-49 201.1 209 58.9
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.4e-49 200.7 252 50.8
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 2.4e-49 199.9 252 50.8
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 5.5e-49 198.7 217 54.8
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 2.1e-48 196.8 247 50.2
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 2.7e-48 196.4 218 52.8
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 6.0e-48 195.3 197 55.3
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 7.9e-48 194.9 281 46.3
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.3e-47 194.1 216 54.2
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.8e-47 193.7 193 59.6
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 8.7e-47 191.4 195 56.9
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 1.1e-46 191.0 317 43.2
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.5e-46 189.9 221 53.8
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 7.4e-46 188.3 231 51.9
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 7.4e-46 188.3 263 46.0
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 2.1e-45 186.8 256 48.8
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 6.2e-45 185.3 200 56.5
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 1.4e-44 184.1 222 50.9
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 1.8e-44 183.7 242 49.6
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 3.1e-44 183.0 150 68.0
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.6e-43 179.9 248 45.6
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 3.4e-43 179.5 181 59.1
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 7.6e-43 178.3 150 66.7
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 8.4e-42 174.9 222 50.9
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.5e-41 173.3 220 50.5
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 3.2e-41 172.9 223 50.2
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 4.2e-41 172.6 210 51.4
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 5.5e-41 172.2 217 50.7
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 7.1e-41 171.8 150 64.7
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 3.5e-40 169.5 224 47.8
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 2.3e-39 166.8 203 49.8
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.1e-38 164.5 229 49.8
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-38 164.5 221 49.3
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.1e-38 164.5 229 49.8
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.5e-38 164.1 199 51.3
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 9.7e-38 161.4 206 44.7
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 9.7e-38 161.4 218 48.2
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-37 161.0 220 47.3
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.8e-37 159.8 274 42.7
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.8e-37 159.8 226 48.7
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 3.7e-37 159.5 227 46.3
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 6.3e-37 158.7 181 53.6
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 1.1e-36 157.9 191 49.2
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.4e-36 156.8 210 46.7
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 4.1e-36 156.0 222 46.8
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 4.1e-36 156.0 216 44.0
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.5e-35 154.1 227 46.3
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.3e-34 151.0 244 43.4
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-34 149.4 231 46.8
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 6.5e-34 148.7 178 48.3
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 5.1e-31 139.0 202 41.1
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 1.5e-30 137.5 157 53.5
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.5e-30 137.5 227 41.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.9e-30 137.1 240 40.4
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 5.7e-30 135.6 267 39.0
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 9.7e-30 134.8 161 50.3
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 2.8e-29 133.3 147 51.7
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 6.9e-28 128.6 164 47.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 9.1e-28 128.3 197 42.6
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 9.1e-28 128.3 167 47.3
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.3e-26 124.4 194 40.2
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.7e-26 124.0 184 46.2
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.7e-26 124.0 184 46.2
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 5.5e-25 119.0 236 38.1
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 4.7e-24 115.9 186 44.1
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.4e-23 114.4 112 62.5
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.8e-23 114.0 169 43.2
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.3e-23 113.6 195 40.0
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.3e-23 113.6 195 40.0
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 2.6e-22 110.2 86 67.4
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 4.4e-22 109.4 162 44.4
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 2.8e-21 106.7 211 39.3
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 3.7e-21 106.3 211 38.9
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 8.2e-21 105.1 181 43.1
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 8.2e-21 105.1 73 71.2
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 1.8e-20 104.0 139 47.5
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 2.9e-18 96.7 211 36.5
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.1e-17 94.7 156 41.0
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.1e-17 94.7 183 38.8
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 1.9e-17 94.0 163 43.6
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 7.2e-17 92.0 64 70.3
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 7.2e-17 92.0 64 70.3
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 7.2e-17 92.0 64 70.3
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 7.2e-17 92.0 64 70.3
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 9.4e-17 91.7 194 37.1
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 4.7e-16 89.4 59 72.9
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 6.1e-16 89.0 56 78.6
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 8.0e-16 88.6 60 71.7
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 1.0e-15 88.2 194 36.6
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 1.4e-15 87.8 57 75.4
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-15 87.4 56 76.8
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 9.7e-14 81.6 97 46.4
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.8e-13 80.1 135 34.8
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 1.1e-12 78.2 54 72.2
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.4e-12 77.0 51 76.5
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 5.9e-11 72.4 51 74.5
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 7.7e-11 72.0 47 72.3
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 7.7e-11 72.0 47 72.3
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 2.2e-10 70.5 124 41.1
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.2e-09 66.2 90 48.9
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 8.8e-07 58.5 187 26.7
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.5e-06 57.8 76 52.6
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.0e-06 57.4 37 67.6
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.0e-06 57.4 138 31.2
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 3.3e-06 56.6 121 33.9
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 9.7e-06 55.1 81 43.2
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 9.7e-06 55.1 38 68.4


User provided reference genes

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