Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 3.3e-53 211.5 108 100.0
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 2.4e-48 195.3 108 89.8
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 3.2e-48 194.9 107 89.7
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.1e-48 193.7 107 88.8
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 7.1e-48 193.7 107 88.8
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 7.1e-48 193.7 107 89.7
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 1.2e-47 193.0 107 88.8
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 3.5e-47 191.4 108 88.9
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.6e-47 191.0 107 88.8
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.6e-47 191.0 106 87.7
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.3e-46 189.5 106 87.7
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.3e-46 189.5 106 87.7
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.8e-46 189.1 102 90.2
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.8e-46 189.1 108 88.9
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 2.3e-46 188.7 108 88.9
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 3.0e-46 188.3 107 86.0
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.0e-46 188.3 103 91.3
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 3.0e-46 188.3 107 86.0
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 3.0e-46 188.3 107 88.8
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 3.9e-46 188.0 107 86.0
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 3.9e-46 188.0 107 86.0
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 3.9e-46 188.0 104 88.5
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 3.9e-46 188.0 106 86.8
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 3.9e-46 188.0 106 86.8
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 5.1e-46 187.6 102 90.2
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 6.7e-46 187.2 103 89.3
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 6.7e-46 187.2 98 91.8
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 1.5e-45 186.0 107 84.1
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.5e-45 186.0 107 86.0
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.9e-45 185.7 101 90.1
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.9e-45 185.7 107 86.0
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.9e-45 185.7 107 86.0
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.9e-45 185.7 107 86.0
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.9e-45 185.7 107 86.0
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.9e-45 185.7 107 86.0
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.3e-45 184.5 107 84.1
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.3e-45 184.5 107 84.1
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 7.4e-45 183.7 104 86.5
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 7.4e-45 183.7 107 84.1
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 7.4e-45 183.7 106 85.8
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 9.6e-45 183.3 104 86.5
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 1.6e-44 182.6 106 84.9
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.6e-44 182.6 98 88.8
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.6e-44 182.6 106 84.9
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.6e-44 182.6 107 84.1
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 2.1e-44 182.2 104 86.5
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 2.8e-44 181.8 107 85.0
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 6.2e-44 180.6 106 84.0
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 6.2e-44 180.6 104 85.6
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 85.0
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 8.2e-44 180.3 106 84.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 85.0
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.4e-43 179.5 104 85.6
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 98 85.7
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 106 81.1
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.4e-43 179.5 108 84.3
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.8e-43 179.1 98 86.7
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 1.8e-43 179.1 107 82.2
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.8e-43 179.1 106 83.0
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.8e-43 179.1 98 87.8
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 1.8e-43 179.1 107 83.2
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.8e-43 179.1 106 81.1
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.8e-43 179.1 108 84.3
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.4e-43 178.7 104 85.6
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 82.1
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 3.1e-43 178.3 104 82.7
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 3.1e-43 178.3 104 84.6
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 4.0e-43 177.9 101 86.1
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 4.0e-43 177.9 103 85.4
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 5.3e-43 177.6 103 83.5
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 6.9e-43 177.2 106 81.1
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 6.9e-43 177.2 107 84.1
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 9.0e-43 176.8 106 80.2
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 9.0e-43 176.8 106 83.0
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.2e-42 176.4 104 81.7
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.2e-42 176.4 107 82.2
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.2e-42 176.4 103 84.5
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.5e-42 176.0 107 82.2
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.5e-42 176.0 107 81.3
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 2.6e-42 175.3 107 84.1
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 2.6e-42 175.3 106 80.2
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 3.4e-42 174.9 98 85.7
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 5.8e-42 174.1 106 81.1
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 5.8e-42 174.1 107 79.4
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 5.8e-42 174.1 103 81.6
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 7.6e-42 173.7 107 77.6
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.0e-41 173.3 107 81.3
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.3e-41 172.9 103 80.6
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 1.3e-41 172.9 98 83.7
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.7e-41 172.6 108 82.4
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.2e-41 172.2 107 78.5
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 4.9e-41 171.0 98 83.7
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 83.7
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.4e-40 169.5 107 77.6
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.4e-40 169.5 107 77.6
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.9e-40 169.1 106 80.2
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 2.5e-40 168.7 107 79.4
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 3.2e-40 168.3 99 85.9
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 4.2e-40 167.9 107 77.6
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 5.5e-40 167.5 95 87.4
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 9.3e-40 166.8 108 76.9
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 1.2e-39 166.4 107 78.5
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 3.5e-39 164.9 98 80.6
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 7.9e-39 163.7 99 78.8
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.0e-38 163.3 98 81.6
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.3e-38 162.9 108 79.6
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 3.0e-38 161.8 107 77.6
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 6.7e-38 160.6 107 72.9
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.9e-37 159.1 102 80.4
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 4.3e-37 157.9 106 74.5
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 5.7e-37 157.5 107 74.8
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.2e-36 155.6 103 73.8
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 2.8e-36 155.2 107 71.0
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 3.7e-36 154.8 107 72.9
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 8.2e-36 153.7 107 70.1
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 8.2e-36 153.7 107 70.1
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 8.2e-36 153.7 107 70.1
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 1.4e-35 152.9 107 70.1
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 2.4e-35 152.1 107 70.1
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 3.1e-35 151.8 107 71.0
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 3.1e-35 151.8 107 71.0
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 5.3e-35 151.0 99 72.7
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 6.9e-35 150.6 107 70.1
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 9.0e-35 150.2 106 67.9
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 2.0e-34 149.1 107 68.2
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.6e-34 148.7 107 67.3
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.6e-34 148.7 107 73.8
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 7.6e-34 147.1 108 70.4
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 7.6e-34 147.1 108 70.4
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 7.6e-34 147.1 108 70.4
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 7.6e-34 147.1 108 70.4
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 8.5e-33 143.7 97 73.2
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 3.2e-32 141.7 107 65.4
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 4.6e-31 137.9 102 63.7
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 7.9e-31 137.1 87 79.3
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.4e-30 136.3 108 69.4
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 5.1e-30 134.4 103 65.0
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 5.7e-29 131.0 92 75.0
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 9.7e-29 130.2 66 92.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 9.7e-29 130.2 104 61.5
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 4.5e-26 121.3 81 71.6
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.7e-25 119.4 65 87.7
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.4e-24 116.3 100 62.0
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 1.9e-24 115.9 91 64.8
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 3.2e-24 115.2 100 62.0
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 3.2e-24 115.2 75 80.0
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 7.2e-24 114.0 93 63.4
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 6.1e-23 110.9 91 64.8
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.4e-22 109.8 98 59.2
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 5.1e-22 107.8 88 62.5
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 1.1e-19 100.1 56 82.1
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.4e-19 99.8 89 59.6
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 7.7e-18 94.0 58 82.8
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.0e-17 91.3 79 62.0
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 8.5e-17 90.5 57 78.9
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.9e-16 89.4 56 76.8
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 5.5e-16 87.8 48 87.5
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.6e-15 86.3 107 49.5
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 4.8e-12 74.7 87 47.1
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.6e-07 59.7 44 68.2
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 1.0e-06 57.0 81 40.7


User provided reference genes

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