Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 1.9e-50 202.2 101 100.0
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 1.9e-26 122.5 105 61.9
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 2.1e-25 119.0 103 66.0
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 1.0e-24 116.7 104 61.5
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 6.7e-24 114.0 101 59.4
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 8.8e-24 113.6 102 62.7
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 2.0e-23 112.5 101 60.4
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 4.3e-23 111.3 106 55.7
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 5.7e-23 110.9 101 59.4
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 7.4e-23 110.5 102 59.8
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 1.7e-22 109.4 101 57.4
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 6.3e-22 107.5 104 58.7
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.4e-21 106.3 102 58.8
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.8e-21 105.9 101 57.4
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 3.1e-21 105.1 104 59.6
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 4.1e-21 104.8 101 56.4
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 6.9e-21 104.0 101 58.4
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 6.9e-21 104.0 102 56.9
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.2e-20 103.2 102 57.8
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 2.0e-20 102.4 102 57.8
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 2.0e-20 102.4 101 50.5
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 1.0e-19 100.1 57 82.5
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 1.3e-19 99.8 101 51.5
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 1.3e-19 99.8 102 56.9
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 1.7e-19 99.4 106 57.5
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 2.2e-19 99.0 104 52.9
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 2.9e-19 98.6 105 56.2
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 3.8e-19 98.2 101 55.4
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 6.5e-19 97.4 101 55.4
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 8.5e-19 97.1 106 55.7
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 8.5e-19 97.1 106 54.7
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 1.1e-18 96.7 99 53.5
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 1.9e-18 95.9 101 53.5
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 2.5e-18 95.5 106 53.8
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 2.5e-18 95.5 99 52.5
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 7.2e-18 94.0 101 47.5
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 1.6e-17 92.8 100 54.0
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 4.7e-17 91.3 106 50.9
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 4.7e-17 91.3 111 51.4
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 6.1e-17 90.9 99 48.5
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 7.9e-17 90.5 106 49.1
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 7.9e-17 90.5 112 48.2
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 7.9e-17 90.5 101 48.5
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.0e-16 90.1 100 53.0
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 2.3e-16 89.0 106 50.9
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 2.3e-16 89.0 106 50.9
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 2.3e-16 89.0 106 46.2
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 3.0e-16 88.6 52 78.8
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 3.0e-16 88.6 80 57.5
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 3.0e-16 88.6 101 48.5
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 3.0e-16 88.6 102 51.0
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 6.7e-16 87.4 101 49.5
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 6.7e-16 87.4 99 48.5
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.1e-15 86.7 106 46.2
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.1e-15 86.7 106 46.2
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 1.1e-15 86.7 105 46.7
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 1.5e-15 86.3 99 47.5
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 2.0e-15 85.9 64 60.9
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 2.6e-15 85.5 83 55.4
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 3.3e-15 85.1 112 46.4
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 4.4e-15 84.7 106 47.2
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 1.3e-14 83.2 53 75.5
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 1.3e-14 83.2 53 73.6
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 1.3e-14 83.2 107 43.9
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.3e-14 83.2 107 43.9
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.3e-14 83.2 107 43.9
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 2.2e-14 82.4 48 77.1
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 2.8e-14 82.0 53 71.7
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 2.8e-14 82.0 101 45.5
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 2.8e-14 82.0 53 71.7
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 2.8e-14 82.0 96 51.0
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 4.8e-14 81.3 52 73.1
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 6.3e-14 80.9 81 53.1
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 8.2e-14 80.5 111 45.0
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 2.4e-13 79.0 58 58.6
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 2.4e-13 79.0 58 58.6
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 5.3e-13 77.8 102 45.1
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 9.1e-13 77.0 98 46.9
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 1.2e-12 76.6 66 57.6
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 1.7e-11 72.8 83 47.0
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 2.9e-11 72.0 49 63.3
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 5.0e-11 71.2 73 43.8
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 5.0e-11 71.2 49 61.2
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 6.5e-11 70.9 60 55.0
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 8.5e-11 70.5 73 43.8
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.2e-10 68.2 104 39.4
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 4.2e-10 68.2 49 59.2
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 5.5e-10 67.8 48 64.6
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 7.2e-10 67.4 48 62.5
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 7.2e-10 67.4 63 54.0
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 2.7e-09 65.5 46 65.2
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 3.6e-09 65.1 49 59.2
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 2.3e-08 62.4 42 61.9


User provided reference genes

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