Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 1.0e-211 740.0 411 100.0
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 3.0e-107 392.9 433 61.4
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 7.3e-101 371.7 416 56.5
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 2.1e-100 370.2 405 56.5
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 1.4e-99 367.5 417 58.3
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 2.3e-99 366.7 432 56.9
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 6.8e-99 365.2 405 57.3
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 5.8e-98 362.1 413 56.2
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 7.5e-98 361.7 409 57.0
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 4.1e-96 355.9 409 57.7
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 8.6e-94 348.2 412 55.8
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 2.5e-93 346.7 414 52.7
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 2.5e-93 346.7 416 53.6
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 3.3e-93 346.3 418 53.1
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 1.6e-92 344.0 418 55.7
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 2.8e-92 343.2 415 55.2
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.1e-91 341.3 409 55.3
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 2.3e-91 340.1 418 54.8
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 2.0e-90 337.0 412 55.6
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 5.8e-90 335.5 409 54.8
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 9.8e-90 334.7 414 53.9
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 3.2e-88 329.7 420 55.2
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 6.0e-87 325.5 420 54.0
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 5.1e-86 322.4 425 52.2
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 1.5e-85 320.9 429 53.1
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 3.3e-85 319.7 417 55.9
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 5.6e-85 318.9 444 53.4
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 9.5e-85 318.2 406 53.7
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 9.5e-85 318.2 414 54.1
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.2e-84 317.8 414 54.1
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 4.7e-84 315.8 417 54.0
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 4.7e-84 315.8 430 51.9
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 8.1e-84 315.1 414 53.9
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 8.1e-84 315.1 418 53.1
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 6.8e-83 312.0 415 51.8
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 6.8e-83 312.0 385 55.6
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 2.0e-82 310.5 422 49.8
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 2.6e-82 310.1 419 50.6
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 5.8e-82 308.9 415 53.5
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 5.8e-82 308.9 420 50.5
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 2.9e-81 306.6 415 48.4
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 8.4e-81 305.1 420 51.2
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 3.2e-80 303.1 429 51.5
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 5.4e-80 302.4 418 49.0
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 1.2e-79 301.2 376 54.8
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 7.8e-79 298.5 420 49.8
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 1.7e-78 297.4 409 48.2
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 1.7e-78 297.4 420 49.0
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 6.6e-78 295.4 421 50.8
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 1.1e-77 294.7 405 49.9
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 1.9e-77 293.9 416 51.2
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 1.9e-77 293.9 425 48.7
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 3.3e-77 293.1 415 48.7
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 9.6e-77 291.6 416 52.2
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 1.2e-76 291.2 453 47.2
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 1.6e-76 290.8 451 47.9
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 3.6e-76 289.7 430 46.3
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 8.1e-76 288.5 437 49.2
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 1.1e-75 288.1 410 51.5
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 3.1e-75 286.6 410 47.3
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 8.9e-75 285.0 408 50.0
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 2.0e-74 283.9 446 50.4
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 2.0e-74 283.9 417 48.4
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 4.4e-74 282.7 422 47.4
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 4.9e-73 279.3 398 51.5
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 6.4e-73 278.9 442 45.0
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 1.1e-72 278.1 424 48.3
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.1e-72 278.1 351 54.7
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 1.4e-72 277.7 414 48.1
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 1.2e-71 274.6 343 55.7
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 1.2e-71 274.6 432 47.2
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 1.6e-71 274.2 404 49.0
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 2.1e-71 273.9 441 43.8
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 2.7e-71 273.5 422 48.8
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 7.8e-71 271.9 430 45.8
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 1.0e-70 271.6 437 45.3
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 2.3e-70 270.4 408 43.9
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 3.9e-70 269.6 438 48.2
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 8.7e-70 268.5 324 54.9
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 1.5e-69 267.7 385 49.4
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 1.5e-69 267.7 325 52.9
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 5.6e-69 265.8 400 48.5
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 5.6e-69 265.8 425 45.4
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 7.3e-69 265.4 403 48.1
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 9.6e-69 265.0 406 44.6
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 9.6e-69 265.0 406 44.6
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 1.6e-68 264.2 424 46.9
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 2.4e-67 260.4 424 45.3
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 3.4e-66 256.5 405 46.2
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 3.4e-66 256.5 228 65.4
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 3.8e-65 253.1 464 42.2
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 1.4e-64 251.1 456 41.0
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 9.3e-64 248.4 447 42.3
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 1.2e-63 248.1 470 42.6
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 2.1e-63 247.3 476 40.1
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 6.0e-63 245.7 425 45.6
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 1.7e-62 244.2 455 39.6
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 1.7e-62 244.2 425 45.4
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 1.7e-62 244.2 365 46.0
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 3.0e-62 243.4 188 69.7
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 2.5e-61 240.4 188 69.1
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 5.6e-61 239.2 194 66.5
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 4.5e-58 229.6 457 41.4
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 7.6e-58 228.8 172 69.8
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 7.6e-58 228.8 465 42.8
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 9.9e-58 228.4 413 40.9
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.7e-57 227.6 349 52.7
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 2.2e-57 227.3 449 41.9
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 2.9e-57 226.9 182 66.5
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 8.4e-57 225.3 402 43.3
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 2.1e-55 220.7 465 37.6
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 3.0e-54 216.9 468 38.7
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 1.3e-52 211.5 371 40.4
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 2.1e-52 210.7 173 61.8
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 8.1e-52 208.8 471 36.7
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 2.0e-50 204.1 353 45.9
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 2.6e-50 203.8 468 37.4
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 2.7e-47 193.7 172 61.0
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 3.9e-46 189.9 440 39.1
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 1.1e-45 188.3 202 55.0
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 5.3e-43 179.5 196 54.1
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 5.3e-43 179.5 392 36.0
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 3.4e-42 176.8 147 62.6
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 2.9e-41 173.7 211 50.7
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 2.7e-39 167.2 186 54.3
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 6.1e-39 166.0 418 36.6
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 1.9e-37 161.0 212 48.1
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 1.2e-31 141.7 131 59.5
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 6.1e-23 112.8 80 73.8
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 8.2e-20 102.4 77 71.4
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.4e-19 101.7 86 65.1
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 4.1e-19 100.1 86 65.1
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 1.1e-16 92.0 115 41.7
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 1.9e-16 91.3 175 37.7
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 6.7e-14 82.8 66 63.6
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 1.1e-13 82.0 63 63.5
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 2.8e-12 77.4 78 55.1
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 4.1e-11 73.6 62 66.1
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 7.7e-10 69.3 72 51.4
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.3e-09 68.6 155 31.6
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 1.1e-08 65.5 144 30.6
A06p29100 Brassica napus HOM05D005186 ORTHO05D006278 1.2e-07 62.0 131 34.4
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 2.7e-07 60.8 149 30.2
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 8.0e-07 59.3 171 26.9
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 8.0e-07 59.3 106 32.1
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 1.0e-06 58.9 171 26.9
MELO3C021171.2 Cucumis melo HOM05D006269 ORTHO05D001487 1.8e-06 58.2 204 24.0
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 1.8e-06 58.2 150 32.0
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.0e-06 57.4 48 58.3
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 4.0e-06 57.0 106 30.2
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 4.0e-06 57.0 107 30.8
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 5.2e-06 56.6 160 25.6
CsaV3_6G000970 Cucumis sativus L. HOM05D006269 ORTHO05D001487 6.8e-06 56.2 204 24.0
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 6.8e-06 56.2 115 30.4


User provided reference genes

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