Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.5e-104 382.9 192 100.0
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.4e-86 322.4 191 82.2
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.1e-86 322.0 185 84.9
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 3.4e-85 318.5 192 79.2
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 4.5e-85 318.2 190 78.9
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 6.4e-84 314.3 192 78.1
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 6.4e-84 314.3 192 80.7
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.9e-83 312.8 192 78.1
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.5e-82 308.5 185 80.0
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.6e-82 308.1 189 81.0
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.3e-81 305.8 189 76.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.9e-81 305.1 185 80.0
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 5.1e-81 304.7 176 81.2
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 6.7e-81 304.3 189 79.9
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.1e-80 303.5 189 77.8
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.5e-80 302.4 189 78.8
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.5e-80 302.4 189 75.7
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 5.6e-80 301.2 192 78.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.1e-79 299.3 175 81.1
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.8e-79 298.9 165 86.7
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 3.7e-79 298.5 173 82.7
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 6.2e-79 297.7 185 76.8
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.4e-78 296.6 185 76.8
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.4e-78 296.6 174 80.5
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.8e-78 296.2 189 76.2
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.4e-78 295.8 168 82.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 3.1e-78 295.4 189 74.6
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.1e-78 295.4 173 80.3
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 5.3e-78 294.7 191 77.0
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.3e-78 294.7 192 75.5
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.3e-78 294.7 189 76.7
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 6.9e-78 294.3 189 74.1
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 9.0e-78 293.9 189 74.1
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 9.0e-78 293.9 189 74.6
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.2e-77 293.5 188 75.5
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.2e-77 293.5 189 74.1
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.2e-77 293.5 189 75.1
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.2e-77 293.5 194 74.2
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.5e-77 293.1 194 74.2
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 2.6e-77 292.4 190 73.7
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 5.8e-77 291.2 189 73.0
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 5.8e-77 291.2 189 73.0
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 5.8e-77 291.2 189 73.5
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 7.6e-77 290.8 173 79.2
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 7.6e-77 290.8 188 76.1
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 7.6e-77 290.8 188 75.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 7.6e-77 290.8 173 79.8
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 9.9e-77 290.4 173 79.2
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 9.9e-77 290.4 170 80.6
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 9.9e-77 290.4 188 73.4
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.3e-76 290.0 189 73.0
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.7e-76 289.7 188 73.9
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.7e-76 289.7 188 73.4
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.7e-76 289.7 188 73.4
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.2e-76 289.3 190 72.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 2.2e-76 289.3 192 74.0
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.1e-75 287.0 173 79.8
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 2.4e-75 285.8 175 78.9
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.4e-75 285.8 174 79.3
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.2e-75 285.4 190 73.2
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 4.2e-75 285.0 188 72.9
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.1e-75 284.3 170 78.2
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.2e-74 283.5 190 70.0
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.7e-74 282.3 182 74.2
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.7e-74 282.3 175 75.4
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 3.5e-74 282.0 182 74.7
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.0e-74 281.2 173 76.3
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.0e-74 281.2 173 76.3
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.3e-73 279.3 191 69.6
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 5.1e-73 278.1 173 74.0
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 6.7e-73 277.7 193 71.5
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.9e-72 276.2 168 79.2
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 4.3e-72 275.0 173 73.4
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 7.4e-72 274.2 168 77.4
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.6e-72 273.9 173 74.0
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 9.6e-72 273.9 182 72.0
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.3e-71 273.5 173 72.8
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.1e-71 272.7 182 72.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.8e-71 272.3 185 70.3
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.8e-71 272.3 167 77.2
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.1e-70 270.4 170 78.2
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.1e-70 270.4 185 71.4
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.1e-70 270.4 182 71.4
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.4e-70 269.2 169 74.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 5.3e-70 268.1 169 75.7
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 9.0e-70 267.3 186 71.0
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.2e-69 266.9 167 76.6
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.2e-69 266.9 182 70.9
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.5e-69 266.5 153 83.0
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.0e-69 266.2 182 69.2
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 4.5e-69 265.0 165 76.4
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.0e-68 263.8 185 66.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.5e-68 261.2 162 77.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 8.4e-68 260.8 173 71.7
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 2.5e-67 259.2 167 71.9
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 3.2e-67 258.8 172 73.8
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 4.2e-67 258.5 172 68.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.2e-66 256.9 173 72.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.2e-66 256.9 170 70.6
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.7e-66 255.8 163 75.5
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 3.5e-66 255.4 164 73.8
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 3.5e-66 255.4 167 73.1
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 4.6e-66 255.0 158 74.7
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 6.0e-66 254.6 168 72.0
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.9e-66 254.2 170 68.8
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.9e-66 254.2 167 73.7
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.0e-65 253.8 167 72.5
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 3.0e-65 252.3 163 71.8
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 5.1e-65 251.5 164 72.6
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.1e-65 251.5 176 70.5
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 8.7e-65 250.8 170 72.4
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.1e-64 250.4 170 68.8
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 5.7e-64 248.1 168 69.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 5.7e-64 248.1 168 69.6
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 5.7e-64 248.1 172 68.6
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 5.7e-64 248.1 164 72.6
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.8e-63 245.7 170 66.5
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 3.7e-63 245.4 168 69.6
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 4.8e-63 245.0 175 66.3
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.3e-63 244.6 165 70.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 3.1e-62 242.3 165 69.7
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 9.0e-62 240.7 174 65.5
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.5e-61 240.0 170 65.9
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.0e-61 239.6 160 71.9
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.4e-61 238.8 170 69.4
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.9e-61 238.0 164 70.1
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.2e-60 236.1 170 68.8
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.2e-60 236.1 170 68.8
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.9e-60 235.7 174 67.8
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.8e-60 235.3 164 67.1
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-59 233.8 170 68.2
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.4e-59 233.4 134 79.9
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.4e-59 233.4 163 68.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.9e-59 233.0 164 68.9
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 4.2e-59 231.9 134 78.4
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.1e-58 229.6 188 61.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.4e-57 226.9 151 71.5
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 3.0e-57 225.7 160 66.2
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-56 223.4 184 62.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.5e-56 222.6 181 62.4
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.4e-54 216.9 154 64.9
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 6.9e-54 214.5 165 63.0
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.9e-54 214.5 139 78.4
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.5e-53 213.4 161 63.4
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.5e-53 213.4 166 66.9
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.6e-53 212.6 156 65.4
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 7.7e-53 211.1 165 59.4
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.3e-52 210.3 176 60.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.5e-52 207.6 159 62.3
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 2.1e-50 203.0 160 62.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 6.1e-50 201.4 158 64.6
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.9e-49 198.7 190 55.8
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.9e-49 198.7 125 76.0
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 8.8e-49 197.6 162 64.8
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.8e-47 191.8 120 76.7
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.8e-46 189.9 164 60.4
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.0e-45 186.4 132 69.7
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 5.9e-45 184.9 177 54.2
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-44 184.1 169 56.8
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.2e-44 183.0 169 56.8
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.9e-43 179.9 154 53.2
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 6.7e-41 171.4 129 64.3
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.0e-40 169.9 116 75.0
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.2e-35 152.5 90 80.0
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.6e-34 149.1 99 70.7
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.6e-32 142.9 91 69.2
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 7.5e-32 141.4 92 75.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.7e-32 141.0 154 42.2
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.2e-31 139.8 177 46.9
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.8e-31 139.4 94 66.0
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 4.7e-26 122.1 73 75.3
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.5e-19 98.6 79 59.5
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.4e-17 94.0 69 68.1
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.5e-13 79.0 123 41.5
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-12 76.3 69 56.5
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 3.3e-11 72.8 173 31.2
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.0e-10 68.2 36 80.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.0e-09 67.8 36 80.6
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 6.8e-09 65.1 80 42.5
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 8.9e-09 64.7 180 30.6
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 1.5e-08 63.9 57 52.6
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 1.7e-07 60.5 32 84.4
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-07 59.7 39 69.2
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 4.9e-07 58.9 32 81.2
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.4e-06 57.4 61 39.3


User provided reference genes

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