Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 1.0e-131 473.4 237 100.0
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 3.5e-79 298.9 244 67.2
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 1.7e-78 296.6 234 65.0
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 2.2e-78 296.2 245 66.9
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 2.5e-77 292.7 238 67.6
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 1.6e-76 290.0 239 64.0
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 2.1e-76 289.7 240 65.8
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 4.7e-76 288.5 239 64.9
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 3.9e-75 285.4 242 64.5
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 1.7e-73 280.0 242 63.6
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 3.7e-73 278.9 233 63.1
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 3.7e-73 278.9 239 64.4
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 4.8e-73 278.5 237 61.6
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 4.8e-73 278.5 237 61.6
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 6.3e-73 278.1 232 62.9
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 8.2e-73 277.7 242 62.4
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 2.4e-72 276.2 239 63.2
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 3.1e-72 275.8 245 62.4
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.0e-72 274.6 245 62.9
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 2.0e-71 273.1 232 62.5
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 3.5e-71 272.3 230 63.0
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 4.5e-71 271.9 241 62.2
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.7e-71 271.2 245 62.4
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 7.7e-71 271.2 243 60.5
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 1.3e-70 270.4 245 62.0
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.7e-70 270.0 231 62.8
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 3.8e-70 268.9 226 63.3
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 9.4e-69 264.2 237 58.6
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 9.4e-69 264.2 243 60.1
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 1.6e-68 263.5 192 71.4
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.6e-68 263.5 238 60.5
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.1e-68 263.1 244 61.1
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.7e-68 262.7 244 59.8
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 3.6e-68 262.3 224 61.6
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 6.1e-68 261.5 232 59.9
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.4e-67 260.4 244 60.7
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 1.8e-67 260.0 232 61.6
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 2.3e-67 259.6 233 61.8
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 2.3e-67 259.6 245 57.6
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 4.0e-67 258.8 238 60.1
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 8.8e-67 257.7 244 59.8
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 1.2e-66 257.3 247 58.7
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 1.2e-66 257.3 236 58.9
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 1.5e-66 256.9 236 59.7
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 1.5e-66 256.9 241 58.9
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 2.0e-66 256.5 235 60.9
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 2.0e-66 256.5 236 60.2
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 2.6e-66 256.1 243 58.0
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 4.4e-66 255.4 183 70.5
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 7.5e-66 254.6 240 57.9
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 7.5e-66 254.6 237 59.5
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 1.3e-65 253.8 239 59.4
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 2.2e-65 253.1 239 59.0
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 2.2e-65 253.1 241 58.5
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 6.3e-65 251.5 183 69.9
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 1.1e-64 250.8 232 58.2
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 1.4e-64 250.4 239 59.0
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.8e-64 250.0 236 59.3
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 2.4e-64 249.6 237 59.1
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 3.1e-64 249.2 238 58.0
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 3.1e-64 249.2 230 59.1
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 7.0e-64 248.1 235 59.6
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.6e-63 246.9 241 57.7
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 3.5e-63 245.7 235 57.0
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 1.0e-62 244.2 243 56.8
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 1.7e-62 243.4 191 67.0
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 2.2e-62 243.0 249 57.4
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 2.9e-62 242.7 223 57.4
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 1.1e-61 240.7 186 67.2
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 1.5e-61 240.4 192 65.1
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 1.9e-61 240.0 235 58.3
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 3.2e-61 239.2 235 58.3
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 3.2e-61 239.2 236 56.8
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 5.5e-61 238.4 237 57.4
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 7.2e-61 238.0 213 59.6
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 9.4e-61 237.7 221 59.7
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 1.6e-60 236.9 207 59.4
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.0e-59 234.2 242 57.0
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 1.5e-58 230.3 235 57.4
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 5.7e-58 228.4 223 57.8
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 1.3e-57 227.3 254 50.8
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 1.8e-56 223.4 185 63.2
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 7.0e-56 221.5 200 59.5
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 7.0e-56 221.5 200 59.5
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 2.0e-55 219.9 240 52.9
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 2.7e-55 219.5 212 59.0
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 3.5e-55 219.2 254 50.0
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 1.1e-53 214.2 205 53.7
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 5.5e-53 211.8 134 76.9
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.6e-52 209.1 239 53.1
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 1.0e-51 207.6 234 52.6
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 8.9e-51 204.5 238 51.7
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.6e-47 193.7 240 50.4
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 2.1e-44 183.3 236 49.2
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 4.1e-40 169.1 194 46.9
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 7.0e-40 168.3 189 50.3
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 7.8e-39 164.9 185 47.6
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 1.1e-37 161.0 197 50.3
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 8.0e-36 154.8 189 49.2
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 3.1e-27 126.3 142 47.9
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 1.3e-25 120.9 164 48.2
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.7e-25 120.6 164 48.2
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.7e-25 120.6 164 48.2
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 1.7e-25 120.6 134 47.8
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 2.4e-24 116.7 132 46.2
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 5.4e-24 115.5 131 46.6
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 9.2e-24 114.8 228 37.3
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 1.2e-23 114.4 142 50.0
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 3.5e-23 112.8 140 46.4
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.0e-22 111.3 122 46.7
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 3.0e-22 109.8 140 47.1
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 1.1e-21 107.8 129 49.6
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.5e-21 107.5 139 46.8
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 4.3e-21 105.9 188 37.8
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 4.3e-21 105.9 188 37.8
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 1.6e-20 104.0 137 46.0
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 1.6e-20 104.0 132 50.0
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 6.2e-20 102.1 146 43.2
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 7.6e-18 95.1 105 52.4
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 2.2e-17 93.6 133 45.9
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 2.9e-17 93.2 151 43.0
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 1.9e-16 90.5 118 46.6
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 9.3e-16 88.2 117 41.0
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 2.6e-10 70.1 64 54.7
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 1.3e-06 57.8 59 61.0


User provided reference genes

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