Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 0.0e+00 1324.3 682 100.0
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 3.1e-173 612.8 751 48.5
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 4.3e-167 592.4 758 48.7
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 3.1e-165 586.3 756 48.8
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 4.4e-159 565.8 739 47.9
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 7.4e-159 565.1 754 45.8
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.7e-158 563.9 745 45.6
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 4.8e-158 562.4 756 46.6
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 3.5e-156 556.2 746 45.2
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 1.5e-154 550.8 740 45.8
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 2.1e-153 547.0 740 46.1
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.7e-153 546.6 744 46.2
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 1.7e-150 537.3 729 44.4
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 2.4e-149 533.5 757 43.9
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 3.1e-149 533.1 755 43.7
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 1.2e-148 531.2 738 44.0
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 2.5e-146 523.5 746 43.4
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 6.8e-144 515.4 741 44.5
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.5e-143 514.2 722 44.9
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.6e-143 513.5 751 44.3
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.8e-142 510.0 750 44.1
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.8e-141 507.3 751 44.1
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 4.1e-141 506.1 750 42.4
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 1.2e-140 504.6 690 46.8
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 1.7e-139 500.7 760 43.6
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.5e-138 496.9 747 43.8
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 5.5e-138 495.7 682 42.8
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 6.1e-137 492.3 743 41.2
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 6.1e-137 492.3 743 41.2
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 5.7e-135 485.7 679 44.2
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.3e-134 484.6 759 42.3
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 6.3e-134 482.3 758 42.3
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.1e-133 481.5 758 42.2
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.7e-131 474.2 745 40.9
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 4.7e-129 466.1 746 42.5
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 4.7e-129 466.1 749 42.5
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 1.8e-128 464.2 730 41.4
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.4e-125 453.8 713 41.4
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 4.1e-125 453.0 728 41.2
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.2e-124 451.4 738 40.4
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 2.7e-124 450.3 711 42.6
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 7.8e-124 448.7 710 41.1
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 1.3e-123 448.0 685 42.2
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 2.9e-123 446.8 740 40.4
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 5.0e-123 446.0 790 39.0
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 5.6e-122 442.6 741 40.5
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 8.0e-121 438.7 746 39.5
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 5.2e-120 436.0 682 41.5
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 4.4e-119 433.0 717 39.6
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 4.1e-117 426.4 745 40.1
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 4.6e-116 422.9 691 40.7
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 1.3e-115 421.4 692 39.7
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 1.7e-115 421.0 694 40.8
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 3.9e-115 419.9 726 38.6
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 2.5e-114 417.2 743 38.8
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.6e-113 414.5 692 39.9
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.5e-111 407.9 775 37.9
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.5e-111 407.9 775 37.9
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 2.2e-110 404.1 688 39.0
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 1.9e-109 401.0 730 38.9
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 9.2e-109 398.7 687 38.6
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 1.2e-108 398.3 713 37.6
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.6e-108 397.9 681 40.1
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.7e-107 394.4 691 37.9
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 2.1e-105 387.5 698 38.3
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 2.3e-104 384.0 697 38.9
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 5.2e-104 382.9 689 37.9
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 3.4e-103 380.2 693 39.5
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 2.4e-101 374.0 694 38.8
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.7e-99 367.9 695 37.6
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.1e-98 365.2 542 44.1
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 1.9e-98 364.4 838 35.6
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 3.4e-95 353.6 651 37.6
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 9.3e-93 345.5 607 39.5
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 4.2e-85 320.1 750 34.8
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.6e-84 318.2 310 57.4
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 3.9e-83 313.5 691 34.6
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 3.2e-77 293.9 392 46.2
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.7e-70 271.6 337 47.5
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.9e-66 258.1 244 57.8
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 7.4e-66 256.1 367 45.2
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 2.4e-64 251.1 261 51.3
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 9.0e-64 249.2 608 32.7
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 4.2e-61 240.4 276 49.6
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 5.5e-61 240.0 328 45.1
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 3.8e-38 164.1 388 34.3
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 4.4e-34 150.6 457 30.0
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 5.3e-32 143.7 142 53.5
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 1.0e-30 139.4 339 35.7
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 1.2e-28 132.5 92 72.8
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 4.0e-27 127.5 196 39.8
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 3.4e-26 124.4 157 47.1
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 4.9e-17 94.0 87 57.5
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 2.0e-15 88.6 82 54.9
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 1.3e-14 85.9 96 45.8
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.5e-10 72.4 152 34.9
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 7.5e-10 70.1 187 29.9
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 4.1e-08 64.3 73 41.1


User provided reference genes

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