Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.1e-103 379.0 191 100.0
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 3.8e-60 235.3 197 63.5
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 8.4e-60 234.2 205 63.9
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.1e-59 233.8 205 65.9
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.4e-59 233.4 200 63.0
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.4e-59 233.4 200 63.0
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 2.4e-59 232.6 200 63.5
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.4e-59 232.6 203 65.5
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 4.2e-59 231.9 200 65.0
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 3.0e-57 225.7 201 63.2
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-56 223.8 202 63.4
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.5e-56 223.4 200 63.5
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 3.3e-56 222.2 201 61.7
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 4.3e-56 221.9 195 60.5
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 5.6e-56 221.5 203 65.0
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.6e-55 219.9 201 61.2
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.6e-55 219.9 202 62.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.8e-55 218.4 200 62.0
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.2e-55 218.0 205 63.4
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 6.2e-55 218.0 205 63.4
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.1e-54 217.2 200 60.0
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 4.0e-54 215.3 201 59.7
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 5.3e-54 214.9 203 59.1
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.6e-53 212.6 204 61.8
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.6e-53 212.6 204 61.8
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 4.5e-53 211.8 203 58.6
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 4.5e-53 211.8 203 58.1
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.0e-52 210.7 214 57.5
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.0e-52 210.7 204 61.3
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.3e-52 210.3 204 59.3
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.3e-52 210.3 199 61.3
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.3e-52 210.3 200 58.5
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.7e-52 209.9 203 58.1
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.9e-52 209.1 184 59.8
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.8e-52 208.8 204 60.8
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.1e-51 207.2 206 58.3
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.4e-51 206.8 200 57.0
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 3.2e-51 205.7 211 59.7
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.2e-51 205.7 204 60.3
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 3.2e-51 205.7 208 60.6
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 4.2e-51 205.3 203 59.6
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 4.2e-51 205.3 201 57.2
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 7.1e-51 204.5 202 57.4
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.2e-50 203.8 200 57.5
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.2e-50 203.8 201 59.2
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.2e-50 203.8 201 59.2
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 2.1e-50 203.0 200 59.0
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 2.1e-50 203.0 200 59.0
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.1e-50 203.0 205 56.6
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.7e-50 202.6 203 55.2
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.0e-49 200.7 202 55.4
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.0e-49 200.7 202 55.4
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.3e-49 199.5 216 52.8
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 3.0e-49 199.1 201 58.2
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 3.0e-49 199.1 196 58.7
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.9e-49 198.7 200 56.0
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.9e-49 198.7 203 56.7
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 5.1e-49 198.4 204 54.4
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 5.1e-49 198.4 204 54.4
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 5.1e-49 198.4 203 54.7
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 6.7e-49 198.0 202 55.0
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.5e-48 196.8 203 53.7
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.5e-48 196.8 201 59.2
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.9e-48 196.4 201 56.2
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.5e-48 196.1 207 55.6
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 4.3e-48 195.3 205 53.2
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 4.3e-48 195.3 205 53.2
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 4.3e-48 195.3 204 55.4
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.4e-48 194.5 199 56.8
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.4e-48 194.5 199 56.8
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 7.4e-48 194.5 198 59.6
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 9.6e-48 194.1 198 57.1
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.3e-47 193.7 197 57.9
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.3e-47 193.7 201 57.7
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 2.1e-47 193.0 200 58.0
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 3.7e-47 192.2 200 55.0
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.7e-47 192.2 200 58.0
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 6.3e-47 191.4 194 55.2
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.8e-46 189.9 191 60.2
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 2.4e-46 189.5 207 54.6
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.1e-46 189.1 204 52.5
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 4.1e-46 188.7 202 53.5
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.2e-45 187.2 203 58.1
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.6e-45 186.0 200 55.5
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 2.6e-45 186.0 207 55.6
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.6e-45 186.0 207 54.1
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 5.9e-45 184.9 211 50.7
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.0e-44 184.1 202 53.0
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.0e-44 184.1 200 55.0
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.7e-44 183.3 153 66.7
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.7e-44 183.3 202 52.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.2e-44 183.0 271 45.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 2.9e-44 182.6 199 52.3
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 2.9e-44 182.6 199 53.3
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 2.9e-44 182.6 199 53.3
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 3.8e-44 182.2 197 55.3
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 3.8e-44 182.2 190 54.7
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 3.8e-44 182.2 214 48.6
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 3.8e-44 182.2 200 53.0
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 3.8e-44 182.2 205 52.7
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 5.0e-44 181.8 212 49.5
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 5.0e-44 181.8 202 52.0
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.1e-43 180.6 203 53.2
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.4e-43 180.3 206 55.3
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 3.2e-43 179.1 209 56.0
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 4.2e-43 178.7 205 54.1
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 4.2e-43 178.7 208 54.8
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 4.2e-43 178.7 328 38.4
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 5.5e-43 178.3 202 55.4
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 5.5e-43 178.3 201 52.2
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.2e-42 177.2 201 52.7
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.1e-42 176.4 204 51.5
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 4.6e-42 175.3 200 52.5
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 7.9e-42 174.5 201 54.2
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.0e-41 172.6 202 54.0
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 3.0e-41 172.6 152 61.8
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.9e-41 172.2 200 48.0
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 5.1e-41 171.8 201 52.7
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 6.7e-41 171.4 202 52.5
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 6.7e-41 171.4 202 52.5
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 6.7e-41 171.4 202 52.5
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 1.5e-40 170.2 201 51.2
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 3.3e-40 169.1 262 43.1
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.3e-40 168.7 202 53.0
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 7.4e-40 167.9 200 49.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 7.4e-40 167.9 188 51.1
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 7.4e-40 167.9 202 49.5
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.6e-39 166.8 200 48.0
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.2e-39 166.4 203 48.3
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 2.8e-39 166.0 201 50.7
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 2.8e-39 166.0 201 50.7
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.4e-38 162.9 120 74.2
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 2.4e-38 162.9 187 51.9
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.7e-36 156.8 193 49.7
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 2.2e-36 156.4 202 46.0
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.9e-36 156.0 170 52.4
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 8.5e-36 154.5 206 46.1
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.5e-35 152.9 195 47.2
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.2e-34 150.6 104 74.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.6e-34 150.2 212 46.2
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 8.8e-33 144.4 205 44.4
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 8.8e-33 144.4 166 54.8
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 4.8e-31 138.7 169 49.1
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 9.1e-30 134.4 118 61.0
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.2e-29 134.0 116 62.9
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.5e-28 128.3 157 52.9
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 9.4e-27 124.4 121 55.4
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 2.1e-26 123.2 123 53.7
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.0e-25 120.9 139 51.8
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.0e-25 120.9 156 53.2
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 5.2e-25 118.6 158 48.7
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 4.8e-23 112.1 154 48.1
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 1.1e-22 110.9 166 45.2
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.8e-22 110.2 205 40.0
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 3.1e-22 109.4 166 42.2
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.2e-21 107.5 153 46.4
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 3.8e-20 102.4 130 49.2
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 3.7e-15 85.9 95 48.4
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 4.1e-14 82.4 73 63.0
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.0e-14 81.6 121 44.6
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 5.0e-12 75.5 84 50.0
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.1e-10 70.1 126 39.7
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.7e-10 68.9 44 81.8
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.7e-10 68.9 44 81.8
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 6.1e-10 68.6 87 46.0
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 8.0e-10 68.2 54 63.0
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 1.4e-09 67.4 192 34.9
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 2.3e-09 66.6 44 77.3
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 1.5e-08 63.9 52 61.5
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 2.8e-07 59.7 103 42.7
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 2.8e-07 59.7 103 42.7
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 3.7e-07 59.3 103 41.7
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 3.7e-07 59.3 103 41.7
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 6.3e-07 58.5 75 42.7


User provided reference genes

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