Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 0.0e+00 1124.4 574 100.0
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 4.2e-187 658.7 564 61.0
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 2.7e-186 656.0 565 61.1
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 1.0e-185 654.1 589 59.9
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 8.1e-183 644.4 564 59.9
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 1.8e-182 643.3 549 62.3
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 3.8e-180 635.6 566 60.2
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 4.6e-178 628.6 565 58.4
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.8e-177 626.7 539 60.5
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 3.6e-175 619.0 565 56.1
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 1.4e-174 617.1 566 57.2
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 4.0e-174 615.5 577 57.4
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.2e-173 614.0 557 58.0
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.6e-173 612.8 558 57.2
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.3e-172 610.5 562 57.3
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 3.8e-172 609.0 569 57.3
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 1.1e-171 607.4 576 57.8
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 1.1e-171 607.4 561 57.0
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 1.3e-167 594.0 421 71.3
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 2.4e-166 589.7 576 55.9
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 4.5e-165 585.5 567 54.9
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 1.7e-164 583.6 570 54.7
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 1.7e-164 583.6 581 54.7
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.8e-161 573.5 566 53.9
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 1.8e-158 563.5 579 53.2
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 1.0e-156 557.8 570 53.2
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 1.0e-156 557.8 563 53.8
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 3.8e-156 555.8 581 52.3
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 4.6e-154 548.9 568 54.6
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 6.1e-154 548.5 566 54.8
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 8.7e-153 544.7 565 52.4
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 3.7e-151 539.3 568 51.4
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 3.4e-149 532.7 558 50.9
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 3.4e-149 532.7 558 50.9
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.1e-147 527.7 566 52.7
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.2e-146 524.2 563 51.3
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 2.0e-144 516.9 458 57.6
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 1.7e-143 513.8 520 53.5
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 8.2e-143 511.5 558 50.4
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 1.2e-141 507.7 634 45.7
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 2.9e-140 503.1 661 43.9
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 5.2e-137 492.3 582 48.5
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 3.1e-134 483.0 628 45.2
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 2.0e-133 480.3 506 52.0
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 5.0e-132 475.7 712 40.4
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 6.7e-129 465.3 712 40.2
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 5.3e-126 455.7 502 50.2
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 5.9e-125 452.2 406 55.7
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 2.1e-122 443.7 440 53.9
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 4.5e-117 426.0 437 51.0
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 1.1e-115 421.4 502 46.8
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 2.5e-115 420.2 433 51.5
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 2.1e-114 417.2 441 51.0
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.0e-101 374.0 443 47.2
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 1.7e-100 370.9 267 68.2
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 6.6e-100 369.0 293 60.8
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.1e-98 364.0 350 52.0
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 2.5e-91 340.5 434 44.7
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 4.9e-87 326.2 412 46.8
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 6.6e-84 315.8 409 42.5
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 5.2e-81 306.2 221 68.8
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 1.2e-72 278.5 572 34.3
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.2e-61 241.9 363 38.6
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 1.4e-54 218.4 180 60.6
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.2e-40 172.2 196 49.0
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 1.5e-40 171.8 129 65.1
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 3.9e-36 157.1 134 56.0
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 1.1e-33 149.1 115 62.6
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 1.7e-31 141.7 105 67.6
GSVIVG01037970001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.5e-27 128.6 100 67.0
Medtr4g035220 Medicago truncatula HOM05D007837 ORTHO05D009965 5.7e-27 126.7 115 59.1
Glyma.03G069100 Glycine max HOM05D007837 ORTHO05D009965 2.8e-26 124.4 175 44.6
Oeu008971.1 Olea europaea HOM05D007837 ORTHO05D009965 4.2e-22 110.5 101 57.4
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 6.1e-21 106.7 62 77.4
Hma1.2p1_0410F.1_g147000 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 3.3e-19 100.9 226 31.0
MCO10G143 Micromonas commoda HOM05D007837 ORTHO05D009965 1.8e-17 95.1 429 24.9
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.9e-16 90.1 255 28.2
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.9e-16 90.1 255 28.2
SMO263G0007 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.7e-15 88.6 262 27.1
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 2.2e-15 88.2 99 48.5
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.8e-15 87.4 253 29.2
PRCOL_00005542 Prasinoderma coloniale HOM05D007837 ORTHO05D009965 6.5e-15 86.7 332 27.4
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 8.5e-15 86.3 99 47.5
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 5.5e-14 83.6 240 30.8
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 2.7e-13 81.3 311 27.0
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 2.3e-12 78.2 271 27.3
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 1.5e-11 75.5 228 29.8
Sabra11G0145800 Salix brachista HOM05D007837 ORTHO05D009965 2.0e-11 75.1 150 36.7
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 2.6e-11 74.7 256 27.0
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 3.3e-11 74.3 293 25.6
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.3e-11 74.3 309 25.6
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 4.4e-11 73.9 256 27.0
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 7.5e-11 73.2 239 29.7
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.7e-10 72.0 378 24.1
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.2e-10 71.6 308 25.0
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.8e-10 71.2 376 23.4
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.7e-10 70.9 303 24.8
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 6.3e-10 70.1 303 24.8
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.3e-10 70.1 303 24.8
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 1.4e-09 68.9 211 25.6
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 1.4e-09 68.9 252 26.2
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.4e-09 68.9 220 26.8
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.4e-09 68.9 228 27.6
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 2.4e-09 68.2 240 27.1
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 2.4e-09 68.2 271 25.8
Cpa.g.sc192.14 Carica papaya HOM05D007837 ORTHO05D009965 3.1e-09 67.8 57 59.6
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 3.1e-09 67.8 208 28.8
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.1e-09 67.8 219 28.3
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 4.1e-09 67.4 196 28.1
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.1e-09 67.4 234 25.6
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 5.3e-09 67.0 254 25.6
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 7.0e-09 66.6 264 24.2
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 9.1e-09 66.2 222 26.6
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 9.1e-09 66.2 230 26.5
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.6e-08 65.5 261 25.7
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.6e-08 65.5 238 26.9
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 2.7e-08 64.7 273 26.7
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 2.7e-08 64.7 255 25.9
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 3.5e-08 64.3 221 25.3
TAR371G0483 Trochodendron aralioides HOM05D001154 ORTHO05D010892 3.5e-08 64.3 40 67.5
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 4.5e-08 63.9 266 25.2
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 5.9e-08 63.5 214 25.2
TAR362G0005 Trochodendron aralioides HOM05D007837 ORTHO05D009965 5.9e-08 63.5 69 47.8
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 7.7e-08 63.2 221 27.6
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 1.0e-07 62.8 221 26.7
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.0e-07 62.8 219 27.9
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.0e-07 62.8 284 23.9
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 1.3e-07 62.4 230 26.1
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 1.3e-07 62.4 219 26.5
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 1.3e-07 62.4 221 26.7
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.3e-07 62.4 215 24.7
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 1.7e-07 62.0 257 25.7
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.7e-07 62.0 223 24.2
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 2.2e-07 61.6 229 27.9
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 2.2e-07 61.6 247 25.9
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 2.9e-07 61.2 233 24.9
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 3.8e-07 60.8 263 25.9
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 6.5e-07 60.1 215 24.2
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 8.5e-07 59.7 192 25.0
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 8.5e-07 59.7 222 26.1
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 1.1e-06 59.3 264 26.1
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 1.5e-06 58.9 193 27.5
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 1.9e-06 58.5 199 27.6
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 5.5e-06 57.0 220 25.0
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 5.5e-06 57.0 126 28.6
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 7.2e-06 56.6 220 25.9


User provided reference genes

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