Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 7.5e-209 730.3 385 100.0
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 7.8e-81 305.1 339 55.5
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 1.7e-67 260.8 346 50.6
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 2.9e-67 260.0 341 48.7
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 4.9e-67 259.2 346 50.3
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 4.9e-67 259.2 360 48.6
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 9.3e-66 255.0 343 48.4
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 2.1e-65 253.8 341 50.7
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 2.7e-65 253.4 340 49.4
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 1.0e-64 251.5 346 49.1
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 1.1e-63 248.1 342 48.0
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 7.4e-63 245.4 356 47.2
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 4.8e-62 242.7 342 47.7
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 6.2e-62 242.3 356 45.5
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 6.9e-61 238.8 341 48.4
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 1.2e-60 238.0 341 47.8
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 2.6e-60 236.9 349 48.4
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 2.2e-59 233.8 342 47.7
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 4.2e-58 229.6 340 46.8
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 7.1e-58 228.8 342 46.8
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 2.1e-57 227.3 346 46.2
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 2.1e-57 227.3 345 46.7
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 4.6e-57 226.1 312 47.1
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 2.3e-56 223.8 344 45.3
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 3.9e-56 223.0 346 48.3
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 8.7e-56 221.9 313 47.6
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 1.3e-54 218.0 347 43.5
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 2.8e-54 216.9 313 47.3
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 4.0e-53 213.0 350 42.9
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 1.0e-51 208.4 310 45.8
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 4.9e-51 206.1 347 42.4
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 1.1e-50 204.9 346 46.0
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.2e-50 203.4 336 46.1
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 3.2e-50 203.4 336 46.1
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 3.2e-50 203.4 355 42.0
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.2e-49 201.4 348 45.7
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 5.1e-48 196.1 349 45.0
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 8.7e-48 195.3 298 44.6
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 1.1e-47 194.9 342 42.7
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 1.5e-47 194.5 280 48.6
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 2.5e-47 193.7 378 37.8
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 2.5e-47 193.7 330 42.4
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 2.5e-47 193.7 357 40.9
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 4.3e-47 193.0 349 42.4
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 9.7e-47 191.8 350 42.0
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 1.3e-46 191.4 350 42.0
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 2.4e-45 187.2 337 44.5
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 4.1e-45 186.4 344 41.6
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 5.3e-45 186.0 347 40.3
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 4.5e-44 183.0 347 40.1
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 5.9e-44 182.6 347 44.1
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 7.6e-44 182.2 314 42.7
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 7.6e-44 182.2 330 41.5
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 1.7e-43 181.0 324 40.4
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 2.9e-43 180.3 368 37.5
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 3.2e-42 176.8 398 39.7
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 4.2e-42 176.4 354 40.7
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 1.5e-39 167.9 347 43.2
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 3.3e-39 166.8 309 38.2
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 1.3e-38 164.9 347 41.5
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 4.8e-38 162.9 319 37.3
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 2.4e-37 160.6 338 37.9
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 2.5e-34 150.6 398 35.9
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 4.2e-34 149.8 342 38.6
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 7.2e-34 149.1 351 36.5
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 2.7e-33 147.1 261 41.0
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 2.7e-33 147.1 311 39.9
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 4.7e-33 146.4 340 38.5
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 3.0e-32 143.7 336 36.9
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 8.8e-32 142.1 336 37.8
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 1.5e-31 141.4 342 37.7
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 5.7e-31 139.4 258 40.7
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 1.3e-30 138.3 357 37.0
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 3.7e-30 136.7 352 38.4
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 3.7e-30 136.7 337 38.0
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 6.3e-30 136.0 338 38.8
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 1.1e-29 135.2 342 38.9
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 1.8e-29 134.4 342 37.1
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 5.3e-29 132.9 338 37.9
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 5.3e-29 132.9 337 36.5
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 6.9e-29 132.5 336 36.9
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 3.4e-28 130.2 351 38.5
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 3.4e-28 130.2 216 42.6
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 5.9e-28 129.4 340 37.6
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 5.9e-28 129.4 350 37.1
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 1.0e-27 128.6 337 35.9
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 1.0e-27 128.6 329 34.0
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 1.3e-27 128.3 340 35.9
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 1.3e-27 128.3 340 40.6
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 2.2e-27 127.5 342 36.0
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 1.1e-26 125.2 340 37.4
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 1.1e-26 125.2 334 37.7
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 1.4e-26 124.8 338 36.4
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 4.2e-26 123.2 183 45.4
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 1.6e-25 121.3 258 37.6
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 1.6e-25 121.3 280 38.6
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 3.9e-24 116.7 232 40.9
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 7.4e-23 112.5 355 34.6
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 1.3e-22 111.7 299 33.1
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 2.8e-22 110.5 201 43.3
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 1.1e-21 108.6 339 35.1
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 1.4e-21 108.2 311 36.7
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 2.4e-21 107.5 305 33.8
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 7.0e-21 105.9 264 35.2
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 9.1e-21 105.5 336 36.9
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 1.6e-20 104.8 241 35.7
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 1.6e-20 104.8 314 33.1
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 2.6e-20 104.0 346 32.7
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 7.7e-20 102.4 159 47.8
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 1.2e-17 95.1 277 35.7
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 1.0e-16 92.0 342 33.6
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 3.0e-16 90.5 206 36.4
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 6.7e-16 89.4 202 33.7
Oeu037282.1 Olea europaea HOM05D006273 ORTHO05D007607 3.7e-14 83.6 251 33.1
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 3.1e-13 80.5 327 33.3
FvH4_2g03741 Fragaria vesca HOM05D006273 ORTHO05D007607 2.7e-12 77.4 118 49.2
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 5.9e-12 76.3 262 29.8
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 7.7e-12 75.9 313 30.0
SEGI_25142 Sequoiadendron giganteum HOM05D006273 ORTHO05D007607 2.2e-11 74.3 241 34.4
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 1.5e-07 61.6 206 28.6
Actinidia00372 Actinidia chinensis HOM05D006273 ORTHO05D007607 2.6e-07 60.8 105 41.9
Dinv15806 Davidia involucrata HOM05D006273 ORTHO05D007607 2.6e-07 60.8 80 47.5


User provided reference genes

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