Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 1.5e-126 456.8 348 100.0
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 1.3e-18 98.2 191 39.3
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 2.2e-18 97.4 185 40.0
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 2.2e-18 97.4 189 40.2
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 3.8e-18 96.7 200 38.5
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 8.5e-18 95.5 195 39.0
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 1.1e-17 95.1 193 38.9
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 1.5e-17 94.7 197 38.6
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 2.5e-17 94.0 194 36.6
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 7.2e-17 92.4 173 41.0
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 9.4e-17 92.0 183 39.9
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 2.7e-16 90.5 201 36.3
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 6.1e-16 89.4 199 35.7
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 8.0e-16 89.0 186 38.7
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 8.0e-16 89.0 172 34.3
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 8.0e-16 89.0 187 33.7
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 1.0e-15 88.6 179 37.4
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 1.8e-15 87.8 193 35.8
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 2.6e-14 84.0 198 35.4
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 9.7e-14 82.0 172 34.3
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 1.3e-13 81.6 200 34.0
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 2.2e-13 80.9 211 35.1
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 4.8e-13 79.7 196 35.7
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 8.2e-13 79.0 174 35.6
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 4.1e-12 76.6 255 30.6
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 4.1e-12 76.6 192 34.4
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 4.1e-12 76.6 211 35.1
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 5.3e-12 76.3 204 35.3
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.3e-12 76.3 180 33.9
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.3e-12 76.3 180 33.9
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 9.1e-12 75.5 170 35.9
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 9.1e-12 75.5 198 34.8
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-11 75.1 180 33.3
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-11 75.1 180 33.3
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 1.6e-11 74.7 195 34.9
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 3.5e-11 73.6 180 32.8
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 4.5e-11 73.2 93 48.4
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.5e-11 73.2 180 32.2
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 7.7e-11 72.4 170 34.7
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 7.7e-11 72.4 184 32.1
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 1.0e-10 72.0 170 32.9
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 1.0e-10 72.0 174 31.6
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 1.3e-10 71.6 176 34.1
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 2.2e-10 70.9 93 49.5
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 2.9e-10 70.5 82 51.2
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 2.9e-10 70.5 82 51.2
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 2.9e-10 70.5 192 30.2
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 3.8e-10 70.1 188 32.4
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 3.8e-10 70.1 188 32.4
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 5.0e-10 69.7 189 34.9
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 5.0e-10 69.7 175 30.9
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 8.5e-10 68.9 170 33.5
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 1.1e-09 68.6 181 33.1
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.5e-09 68.2 93 46.2
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 2.5e-09 67.4 93 48.4
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 3.2e-09 67.0 92 47.8
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 5.5e-09 66.2 170 32.9
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 5.5e-09 66.2 183 32.8
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 7.2e-09 65.9 195 32.3
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 9.4e-09 65.5 195 34.4
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 2.7e-08 63.9 216 30.6
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 2.7e-08 63.9 104 43.3
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 3.0e-07 60.5 92 45.7
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 8.8e-07 58.9 196 32.1
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 1.5e-06 58.2 125 38.4
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 2.0e-06 57.8 111 35.1
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 2.0e-06 57.8 185 31.4
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 3.4e-06 57.0 102 39.2
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 3.4e-06 57.0 125 38.4
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 4.4e-06 56.6 183 30.1
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 5.7e-06 56.2 86 43.0
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 7.5e-06 55.8 183 30.6
Gorai.004G159200 Gossypium raimondii HOM05D006343 ORTHO05D005694 9.8e-06 55.5 86 43.0


User provided reference genes

Program Settings