Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 4.1e-182 641.3 319 100.0
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 8.0e-162 573.9 319 87.5
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 8.0e-162 573.9 319 86.8
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.8e-161 572.8 319 87.5
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.6e-160 568.9 319 86.5
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 4.4e-160 568.2 319 86.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 5.7e-160 567.8 319 85.9
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 2.8e-159 565.5 320 85.9
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.9e-159 564.7 319 86.2
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 6.3e-159 564.3 319 84.6
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 8.3e-159 563.9 319 86.2
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.8e-158 562.8 319 84.3
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 7.0e-158 560.8 320 84.7
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 7.0e-158 560.8 316 85.1
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 7.0e-158 560.8 319 85.9
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.6e-157 559.7 319 84.0
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.6e-157 559.7 319 84.0
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 4.5e-157 558.1 320 85.9
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 4.5e-157 558.1 319 83.7
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 5.9e-157 557.8 318 85.2
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.3e-156 555.8 320 84.7
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 2.3e-156 555.8 319 84.3
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 5.0e-156 554.7 319 84.0
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 5.0e-156 554.7 319 84.3
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 6.6e-156 554.3 319 84.0
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.1e-155 553.5 320 84.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.5e-155 553.1 319 83.4
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 5.6e-155 551.2 320 85.0
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.8e-154 548.9 309 85.8
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 3.6e-154 548.5 319 84.0
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 4.7e-154 548.1 320 83.4
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 6.1e-154 547.7 319 82.8
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.8e-153 546.2 319 84.3
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.3e-153 545.8 320 83.4
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 3.0e-153 545.4 320 82.5
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 4.0e-153 545.0 319 83.1
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 4.0e-153 545.0 355 77.2
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.2e-153 544.7 320 82.5
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 5.2e-153 544.7 319 83.4
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 5.2e-153 544.7 319 82.8
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.2e-152 543.5 320 84.1
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.0e-152 542.7 319 82.4
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 2.0e-152 542.7 319 83.7
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 2.0e-152 542.7 319 82.4
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-152 542.3 320 82.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 4.4e-152 541.6 320 82.8
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 7.5e-152 540.8 319 82.1
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 7.5e-152 540.8 319 83.1
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 7.5e-152 540.8 319 83.1
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 7.5e-152 540.8 319 82.4
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.3e-151 540.0 317 82.0
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.7e-151 539.7 319 82.8
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.2e-151 539.3 319 82.4
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 4.9e-151 538.1 319 81.2
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 4.9e-151 538.1 307 84.4
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.3e-151 537.3 333 79.6
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.8e-150 536.2 319 81.5
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.4e-150 535.8 319 83.7
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.2e-150 535.4 319 80.6
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 4.1e-150 535.0 319 82.1
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 5.4e-150 534.6 320 81.9
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.4e-150 534.6 356 74.4
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 5.4e-150 534.6 317 81.1
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 9.2e-150 533.9 314 83.4
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 3.5e-149 531.9 319 81.2
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 3.5e-149 531.9 317 80.1
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 7.8e-149 530.8 317 79.8
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.3e-148 530.0 320 78.8
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.3e-148 529.3 310 82.9
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.0e-148 528.9 333 79.0
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 6.6e-148 527.7 319 80.9
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 9.5e-147 523.9 317 78.9
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.6e-146 523.1 362 71.8
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 4.7e-146 521.5 310 83.2
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 4.7e-146 521.5 310 83.2
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 6.2e-146 521.2 357 72.8
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 6.2e-146 521.2 320 78.8
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 8.0e-146 520.8 322 78.0
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.0e-145 520.4 322 78.6
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.0e-145 520.4 319 77.4
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.8e-145 519.6 317 80.1
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 6.8e-145 517.7 322 77.3
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.2e-144 516.9 317 77.3
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 4.4e-144 515.0 386 70.5
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 4.9e-143 511.5 319 78.7
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 6.4e-143 511.1 304 82.9
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.4e-142 510.0 310 80.6
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.2e-142 508.8 319 78.7
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 7.0e-142 507.7 319 76.5
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.0e-140 503.8 319 76.5
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 1.7e-140 503.1 305 82.0
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 1.4e-134 483.4 319 77.1
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.9e-134 483.0 320 73.4
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.3e-132 476.9 319 73.0
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 8.1e-130 467.6 320 70.3
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 8.9e-129 464.2 322 69.6
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 5.4e-126 454.9 309 71.2
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 2.3e-124 449.5 328 68.0
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 5.2e-121 438.3 250 85.6
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 3.2e-118 429.1 243 84.8
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 4.2e-118 428.7 250 82.8
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 3.0e-116 422.5 249 83.1
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 3.3e-115 419.1 250 80.4
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.8e-113 413.3 320 69.4
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 9.0e-113 411.0 315 67.9
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.5e-112 410.2 356 63.5
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 4.9e-111 405.2 297 68.4
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 7.9e-109 397.9 317 64.4
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 2.5e-107 392.9 244 75.0
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 4.9e-95 352.1 312 59.0
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 3.1e-89 332.8 198 80.8
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 2.9e-87 326.2 232 70.7
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.5e-75 287.3 206 73.3
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 5.9e-72 275.4 319 47.6
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 2.7e-69 266.5 263 51.3
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 2.0e-67 260.4 197 66.5
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.5e-62 244.2 312 46.8
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 9.4e-62 241.5 137 81.8
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.2e-61 241.1 138 82.6
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.8e-57 227.3 160 67.5
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 5.5e-54 215.7 127 78.0
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.6e-43 180.3 114 78.9
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 7.5e-43 178.7 114 78.1
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.4e-41 174.5 114 76.3
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.1e-41 172.9 128 71.1
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.7e-40 170.2 107 79.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.7e-40 170.2 107 79.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 2.9e-39 166.8 107 77.6
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 6.6e-39 165.6 98 82.7
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-35 153.3 162 50.6
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.7e-34 151.0 199 49.2
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 2.2e-34 150.6 109 69.7
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 9.8e-27 125.2 77 77.9
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 1.1e-25 121.7 73 82.2
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 2.3e-23 114.0 188 43.6
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 3.9e-23 113.2 67 86.6
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 1.6e-21 107.8 80 65.0
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.4e-20 104.8 62 79.0
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 4.0e-20 103.2 66 80.3
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 4.9e-18 96.3 61 75.4
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 6.4e-18 95.9 71 64.8
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 4.1e-17 93.2 60 75.0
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 1.9e-14 84.3 212 30.7
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 4.0e-12 76.6 40 85.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 2.6e-11 73.9 51 70.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 9.9e-11 72.0 50 72.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 4.1e-09 66.6 56 60.7
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 2.7e-08 63.9 56 60.7
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 1.1e-06 58.5 164 28.7
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 3.3e-06 57.0 163 29.4


User provided reference genes

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