Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.2e-103 380.2 236 100.0
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 5.7e-66 255.0 147 89.1
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 3.4e-42 176.0 142 63.4
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 6.6e-38 161.8 142 55.6
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 1.9e-37 160.2 142 54.2
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 3.3e-37 159.5 142 55.6
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 1.6e-36 157.1 147 53.1
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.0e-35 154.5 142 54.9
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 3.0e-35 152.9 141 53.2
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 6.8e-35 151.8 139 52.5
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 1.2e-34 151.0 142 52.1
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 7.5e-34 148.3 142 50.7
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 1.3e-33 147.5 142 50.7
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 2.9e-33 146.4 148 48.6
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 3.7e-33 146.0 142 52.8
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 3.7e-33 146.0 139 51.8
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 4.9e-33 145.6 142 50.0
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 6.4e-33 145.2 141 51.8
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 8.3e-33 144.8 142 52.1
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 5.4e-32 142.1 141 52.5
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 1.2e-31 141.0 141 47.5
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.6e-31 140.6 150 49.3
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.7e-31 139.8 146 47.3
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.7e-31 139.8 142 48.6
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 4.6e-31 139.0 138 49.3
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 7.8e-31 138.3 146 46.6
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 1.0e-30 137.9 150 46.7
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 1.0e-30 137.9 143 49.0
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.3e-30 137.5 143 49.0
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 1.7e-30 137.1 142 47.2
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 2.3e-30 136.7 142 50.7
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 2.3e-30 136.7 140 48.6
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.9e-30 136.0 142 48.6
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 5.0e-30 135.6 142 49.3
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 6.6e-30 135.2 134 52.2
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 6.6e-30 135.2 141 48.9
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 1.1e-29 134.4 142 48.6
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 1.1e-29 134.4 142 50.0
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 1.5e-29 134.0 141 48.2
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 1.9e-29 133.7 141 46.8
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 3.3e-29 132.9 141 47.5
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 3.3e-29 132.9 167 43.7
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 4.3e-29 132.5 141 46.8
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 4.3e-29 132.5 141 46.8
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 4.3e-29 132.5 141 48.9
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 4.3e-29 132.5 146 50.7
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 5.6e-29 132.1 142 46.5
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.6e-29 132.1 142 47.2
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 7.3e-29 131.7 143 51.7
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 9.5e-29 131.3 142 49.3
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 9.5e-29 131.3 148 45.3
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 2.8e-28 129.8 141 46.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 2.8e-28 129.8 141 46.1
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 2.8e-28 129.8 150 46.0
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 2.8e-28 129.8 142 47.2
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 3.6e-28 129.4 142 47.2
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 6.2e-28 128.6 141 44.7
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 1.4e-27 127.5 150 48.0
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 1.4e-27 127.5 150 48.0
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 1.4e-27 127.5 142 48.6
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 2.3e-27 126.7 142 45.1
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 2.3e-27 126.7 143 44.1
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 2.3e-27 126.7 142 47.9
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 2.3e-27 126.7 143 43.4
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 3.1e-27 126.3 146 46.6
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 3.1e-27 126.3 142 46.5
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 3.1e-27 126.3 142 47.2
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 4.0e-27 125.9 145 46.9
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 8.9e-27 124.8 155 47.1
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 2.0e-26 123.6 142 45.8
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 2.0e-26 123.6 145 49.0
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 2.6e-26 123.2 142 47.2
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 3.4e-26 122.9 143 48.3
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 7.5e-26 121.7 137 43.1
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 7.5e-26 121.7 142 47.9
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 7.5e-26 121.7 138 46.4
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 9.8e-26 121.3 177 42.9
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 2.2e-25 120.2 142 43.7
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 3.2e-24 116.3 188 38.3
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 7.0e-24 115.2 142 45.8
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 1.2e-23 114.4 144 43.8
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 5.0e-22 109.0 161 38.5
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.1e-20 103.6 142 40.8
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.1e-20 103.6 148 38.5
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.8e-19 100.5 119 46.2
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 1.7e-17 94.0 142 39.4
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 4.9e-17 92.4 145 35.9
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 4.6e-15 85.9 143 32.9
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 1.9e-13 80.5 145 31.0
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 2.9e-09 66.6 114 34.2


User provided reference genes

Program Settings