Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1479.9 841 100.0
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1184.1 833 77.7
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1181.8 834 76.6
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1176.8 853 75.7
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1173.7 847 75.6
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1172.9 832 75.4
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1170.2 854 75.8
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1167.1 848 76.9
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1164.8 850 78.1
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1163.7 840 74.5
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1163.3 821 76.6
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1162.1 835 75.9
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1161.0 832 74.2
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1160.2 832 74.2
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1157.9 843 77.3
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1156.7 838 78.2
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1156.7 826 75.2
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1156.0 847 74.6
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1155.2 826 75.1
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1154.0 837 74.1
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1153.7 826 74.9
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1152.9 846 77.7
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1152.9 841 75.9
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1152.5 826 75.8
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1152.1 841 76.5
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1149.8 841 76.0
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 841 77.2
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1147.5 826 74.6
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1147.5 826 74.6
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1146.3 841 75.7
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1146.0 846 74.8
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 832 76.4
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 841 76.1
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1140.9 842 77.1
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1137.1 842 77.0
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 840 76.5
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 789 76.2
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1130.9 842 76.8
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1129.8 841 72.7
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1124.8 843 72.2
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1124.4 796 77.1
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 841 75.9
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1122.1 794 75.9
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1118.6 841 70.6
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1115.1 873 74.9
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1114.4 833 75.3
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1114.4 842 75.3
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 831 77.0
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 941 66.8
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1103.6 843 76.6
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1103.6 841 70.9
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1102.8 843 76.5
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1097.8 845 70.5
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 845 70.1
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1095.9 845 70.5
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 838 72.9
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1091.6 838 74.3
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1090.9 832 71.4
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 843 73.3
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1087.8 827 71.3
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 671 82.0
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1084.7 824 71.8
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 832 72.6
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1083.2 827 72.8
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1082.8 860 69.2
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1082.4 860 69.3
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1077.4 825 71.8
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1075.5 850 71.8
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1075.5 820 67.7
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 5.8e-312 1074.7 824 71.2
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 1.2e-311 1073.2 840 69.3
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 2.9e-311 1071.6 823 71.2
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 6.9e-311 1070.5 835 69.8
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 8.6e-311 1070.1 836 68.8
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 4.4e-310 1067.8 828 71.6
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 1.7e-309 1065.8 830 71.4
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 2.2e-309 1065.4 817 71.2
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 2.8e-309 1065.1 836 69.9
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 6.3e-309 1063.9 833 70.3
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 1.8e-308 1062.4 817 71.4
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 4.1e-308 1061.2 817 71.2
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 6.9e-308 1060.4 798 70.6
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 6.9e-308 1060.4 842 70.7
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 1.9e-305 1052.4 851 68.7
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 9.4e-305 1050.0 840 66.5
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 884 66.7
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 3.6e-304 1048.1 835 69.9
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 3.0e-303 1045.0 841 68.1
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 6.3e-301 1037.3 756 72.2
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 5.3e-300 1034.2 818 68.5
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 7.7e-299 1030.4 841 66.7
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 1.2e-296 1023.1 910 63.7
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 1.2e-294 1016.5 837 67.1
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 1.7e-293 1012.7 733 72.2
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 4.4e-286 988.0 670 73.7
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 2.3e-282 975.7 833 63.5
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 3.2e-281 971.8 648 76.4
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 4.4e-278 961.4 648 75.5
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.2e-275 953.4 824 62.1
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 3.8e-274 948.3 759 68.6
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 8.6e-274 947.2 761 69.5
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 8.6e-274 947.2 934 62.1
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 1.6e-272 943.0 624 75.3
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 4.7e-272 941.4 831 60.5
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 1.8e-268 929.5 637 74.6
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 5.9e-267 924.5 787 66.8
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 2.5e-257 892.5 568 78.5
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 9.5e-257 890.6 845 56.0
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 5.6e-241 838.2 789 56.1
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.4e-239 832.8 788 55.2
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 1.3e-234 817.0 791 54.6
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 2.6e-222 776.2 840 58.9
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 7.1e-220 768.1 852 54.8
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 9.0e-215 751.1 795 50.2
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 3.6e-195 686.0 430 81.2
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.7e-165 587.4 477 66.5
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 5.0e-149 532.7 444 65.5
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 9.5e-140 501.9 322 79.5
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.8e-123 447.2 301 74.8
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 1.1e-122 445.3 736 36.1
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 5.6e-116 422.9 374 73.3
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 6.2e-115 419.5 789 34.3
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 7.1e-111 406.0 263 78.3
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.0e-101 374.0 390 54.1
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 4.3e-84 317.0 856 29.6
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.4e-74 285.4 280 58.9
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.0e-69 267.7 399 49.9
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 2.2e-59 235.0 219 59.8
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 2.7e-49 201.4 131 74.0
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 4.5e-49 200.7 140 72.1
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.2e-44 186.0 142 73.2
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 8.3e-43 179.9 125 71.2
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.9e-34 152.1 153 53.6
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.4e-34 151.8 153 53.6
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.2e-33 149.4 160 55.6
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 1.4e-29 136.0 121 62.8
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 2.4e-18 98.6 70 71.4
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 1.3e-08 66.2 77 49.4


User provided reference genes

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