Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 2.9e-79 300.4 223 100.0
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 1.0e-23 115.9 159 78.0
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 5.1e-23 113.6 212 65.1
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 3.1e-20 104.4 157 75.2
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 5.8e-19 100.1 140 81.4
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 1.7e-18 98.6 80 61.2
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 1.7e-18 98.6 160 71.9
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 3.8e-18 97.4 160 71.2
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 4.9e-18 97.1 78 62.8
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 8.4e-18 96.3 178 62.9
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 8.4e-18 96.3 136 83.8
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 1.4e-17 95.5 73 61.6
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 5.4e-17 93.6 78 60.3
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 7.1e-17 93.2 142 77.5
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 7.1e-17 93.2 78 62.8
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 9.3e-17 92.8 156 73.7
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 1.2e-16 92.4 159 69.8
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 2.1e-16 91.7 190 64.2
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 2.7e-16 91.3 155 73.5
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.7e-16 91.3 154 68.2
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 3.5e-16 90.9 168 70.2
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 3.5e-16 90.9 97 56.7
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 3.5e-16 90.9 97 56.7
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 7.9e-16 89.7 157 75.2
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.3e-15 89.0 81 61.7
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.8e-15 88.6 133 81.2
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 3.0e-15 87.8 54 72.2
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 3.0e-15 87.8 56 78.6
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 3.9e-15 87.4 69 60.9
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 5.1e-15 87.0 157 73.2
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 5.1e-15 87.0 100 77.0
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 6.7e-15 86.7 54 70.4
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 1.1e-14 85.9 122 65.6
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 1.5e-14 85.5 71 60.6
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.5e-14 85.5 161 72.0
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 1.9e-14 85.1 159 71.7
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 2.5e-14 84.7 122 63.9
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 3.3e-14 84.3 171 64.3
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 3.3e-14 84.3 136 80.1
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 3.3e-14 84.3 136 80.1
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 4.3e-14 84.0 136 80.1
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 7.4e-14 83.2 122 64.8
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 9.6e-14 82.8 117 69.2
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 2.1e-13 81.6 150 74.0
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 2.8e-13 81.3 136 78.7
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 3.7e-13 80.9 116 66.4
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 3.7e-13 80.9 136 78.7
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 4.8e-13 80.5 136 76.5
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 4.8e-13 80.5 154 74.0
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 6.2e-13 80.1 207 58.0
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 6.2e-13 80.1 100 77.0
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 8.1e-13 79.7 191 60.2
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 1.1e-12 79.3 133 79.7
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 1.1e-12 79.3 133 78.9
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 1.1e-12 79.3 153 71.9
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 1.4e-12 79.0 154 68.2
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 1.4e-12 79.0 151 72.8
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 1.8e-12 78.6 154 67.5
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 2.4e-12 78.2 153 71.2
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 2.4e-12 78.2 153 71.2
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 2.4e-12 78.2 74 56.8
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 3.1e-12 77.8 95 77.9
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 3.1e-12 77.8 76 53.9
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 4.0e-12 77.4 150 72.0
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 4.0e-12 77.4 155 66.5
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 4.0e-12 77.4 64 64.1
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 6.9e-12 76.6 74 55.4
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 9.0e-12 76.3 69 53.6
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 9.0e-12 76.3 113 43.4
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 1.2e-11 75.9 73 57.5
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 2.0e-11 75.1 69 60.9
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 2.0e-11 75.1 192 59.9
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 2.0e-11 75.1 123 64.2
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 2.6e-11 74.7 169 47.3
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 2.6e-11 74.7 164 50.0
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 3.4e-11 74.3 66 51.5
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 3.4e-11 74.3 61 62.3
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 4.5e-11 73.9 122 63.9
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 9.9e-11 72.8 133 77.4
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 4.9e-10 70.5 45 73.3
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 4.9e-10 70.5 73 49.3
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 4.9e-10 70.5 75 50.7
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 4.9e-10 70.5 73 54.8
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 4.9e-10 70.5 77 44.2
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.4e-10 70.1 82 47.6
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 8.4e-10 69.7 75 46.7
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 2.4e-09 68.2 57 56.1
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.2e-09 67.8 126 61.1
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.2e-09 67.4 82 50.0
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 4.2e-09 67.4 76 46.1
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 4.2e-09 67.4 70 50.0
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 5.5e-09 67.0 51 60.8
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 9.3e-09 66.2 91 41.8
Cc10_g08260 Coffea canephora HOM05D008425 ORTHO05D010555 1.2e-08 65.9 109 75.2
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 2.7e-08 64.7 66 54.5
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 4.6e-08 63.9 103 55.3
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 6.0e-08 63.5 54 53.7
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.0e-07 62.8 65 50.8
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.3e-07 62.4 139 46.0
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.3e-07 62.4 139 46.0
Oeu012210.1 Olea europaea HOM05D006739 ORTHO05D008402 1.8e-07 62.0 73 68.5
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 5.1e-07 60.5 39 71.8
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 6.7e-07 60.1 103 34.0
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 8.7e-07 59.7 44 59.1
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 1.1e-06 59.3 45 62.2
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 1.9e-06 58.5 42 66.7
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 5.6e-06 57.0 61 49.2
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 9.6e-06 56.2 92 29.3
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 9.6e-06 56.2 42 64.3
Dinv22007 Davidia involucrata HOM05D006739 ORTHO05D008402 9.6e-06 56.2 109 69.7


User provided reference genes

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