Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0062 Punica granatum HOM05D006557 ORTHO05D008177 0.0e+00 1140.6 571 100.0
Cfa004174 Carpinus fangiana HOM05D006557 ORTHO05D008177 1.5e-216 756.5 568 67.4
Prupe.2G153600 Prunus persica HOM05D006557 ORTHO05D008177 1.2e-213 746.9 577 66.4
TAR375G0852 Trochodendron aralioides HOM05D006557 ORTHO05D008177 3.7e-212 741.9 575 66.3
Nn6g34278 Nelumbo nucifera HOM05D006557 ORTHO05D008177 4.8e-212 741.5 579 65.1
Potri.014G077700 Populus trichocarpa HOM05D006557 ORTHO05D008177 4.8e-212 741.5 578 66.3
Actinidia33449 Actinidia chinensis HOM05D006557 ORTHO05D008177 1.4e-211 740.0 574 64.3
Gorai.001G172000 Gossypium raimondii HOM05D006557 ORTHO05D008177 2.4e-211 739.2 575 65.7
Ciclev10019481m.g Citrus clementina HOM05D006557 ORTHO05D008177 1.2e-210 736.9 576 66.0
Gohir.D07G150201 Gossypium hirsutum HOM05D006557 ORTHO05D008177 2.0e-210 736.1 575 65.6
GSVIVG01026363001 Vitis vinifera HOM05D006557 ORTHO05D008177 2.7e-210 735.7 574 65.5
Thecc.01G369600 Theobroma cacao HOM05D006557 ORTHO05D008177 1.3e-209 733.4 579 65.6
RcHm_v2.0_Chr1g0352061 Rosa chinensis HOM05D006557 ORTHO05D008177 1.7e-209 733.0 578 64.9
CiPaw.01G052200 Carya illinoinensis HOM05D006557 ORTHO05D008177 6.6e-209 731.1 569 65.7
FvH4_7g12930 Fragaria vesca HOM05D006557 ORTHO05D008177 8.6e-209 730.7 572 63.5
QL08p050821 Quercus lobata HOM05D006557 ORTHO05D008177 8.6e-209 730.7 568 65.5
Sc02g0002240 Simmondsia chinensis HOM05D006557 ORTHO05D008177 1.5e-208 729.9 573 64.0
FAN01G0615 Fragaria x ananassa HOM05D006557 ORTHO05D008177 1.9e-208 729.6 573 63.2
Eucgr.E00220 Eucalyptus grandis HOM05D006557 ORTHO05D008177 4.2e-208 728.4 572 65.4
CSS0001854 Camellia sinensis var. sinensis HOM05D006557 ORTHO05D008177 1.6e-207 726.5 567 65.1
Manes.01G262900 Manihot esculenta HOM05D006557 ORTHO05D008177 2.1e-207 726.1 570 64.4
Gohir.A07G144300 Gossypium hirsutum HOM05D006557 ORTHO05D008177 6.1e-207 724.5 575 64.7
FAN06G2259 Fragaria x ananassa HOM05D006557 ORTHO05D008177 8.9e-206 720.7 577 63.1
Atru.chr5.390 Acer truncatum HOM05D006557 ORTHO05D008177 1.5e-205 719.9 577 65.5
Glyma.18G228300 Glycine max HOM05D006557 ORTHO05D008177 2.6e-205 719.2 569 63.4
MBI04_g40842_MAGBIO Magnolia biondii HOM05D006557 ORTHO05D008177 1.3e-204 716.8 566 65.5
Atru.chr5.396 Acer truncatum HOM05D006557 ORTHO05D008177 1.7e-204 716.5 577 65.3
Phvul.008G069900 Phaseolus vulgaris HOM05D006557 ORTHO05D008177 1.7e-204 716.5 569 63.4
CANSAT56G3931 Cannabis sativa HOM05D006557 ORTHO05D008177 5.4e-203 711.4 574 62.7
Glyma.09G263800 Glycine max HOM05D006557 ORTHO05D008177 5.4e-203 711.4 569 62.4
Aqoxy7G00469 Aquilegia oxysepala HOM05D006557 ORTHO05D008177 9.2e-203 710.7 572 64.0
Lalb_Chr01g0021061 Lupinus albus HOM05D006557 ORTHO05D008177 1.2e-202 710.3 573 63.0
Oeu058605.1 Olea europaea HOM05D006557 ORTHO05D008177 7.8e-202 707.6 571 62.0
arahy.Tifrunner.gnm1.ann1.P0RXA9 Arachis hypogaea HOM05D006557 ORTHO05D008177 1.3e-201 706.8 568 62.3
Solyc01g091860.4 Solanum lycopersicum HOM05D006557 ORTHO05D008177 2.3e-201 706.1 575 63.0
MSTRG.17229 Avicennia marina HOM05D006557 ORTHO05D008177 3.9e-201 705.3 569 63.8
Cc02_g37160 Coffea canephora HOM05D006557 ORTHO05D008177 3.9e-201 705.3 573 62.8
Sopen01g037630 Solanum pennellii HOM05D006557 ORTHO05D008177 6.6e-201 704.5 575 62.6
Duzib133G0555 Durio zibethinus HOM05D006557 ORTHO05D008177 8.6e-201 704.1 574 63.4
Lsat_1_v5_gn_7_8181 Lactuca sativa HOM05D006557 ORTHO05D008177 1.9e-200 703.0 571 62.9
PGSC0003DMG400000131 Solanum tuberosum HOM05D006557 ORTHO05D008177 5.6e-200 701.4 580 62.4
TWI23G0976 Tripterygium wilfordii HOM05D006557 ORTHO05D008177 2.8e-199 699.1 574 64.3
FAN03G1058 Fragaria x ananassa HOM05D006557 ORTHO05D008177 4.7e-199 698.4 633 57.5
Sed0001202 Sechium edule HOM05D006557 ORTHO05D008177 4.7e-199 698.4 577 62.6
FAN10G2465 Fragaria x ananassa HOM05D006557 ORTHO05D008177 2.0e-197 693.0 572 61.4
CsaV3_6G041250 Cucumis sativus L. HOM05D006557 ORTHO05D008177 1.3e-196 690.3 574 62.0
Hund27329 Selenicereus undatus HOM05D006557 ORTHO05D008177 6.4e-196 688.0 599 59.1
PSO478G0993 Papaver somniferum HOM05D006557 ORTHO05D008177 3.2e-195 685.6 571 61.8
Lj1g0000530 Lotus japonicus HOM05D006557 ORTHO05D008177 7.0e-195 684.5 565 61.9
Medtr7g076590 Medicago truncatula HOM05D006557 ORTHO05D008177 7.0e-195 684.5 566 60.6
HanXRQChr04g0121771 Helianthus annuus HOM05D006557 ORTHO05D008177 4.6e-194 681.8 571 61.6
COL.COLO4_12633 Corchorus olitorius HOM05D006557 ORTHO05D008177 6.0e-194 681.4 519 66.5
ECA236G4623 Erigeron canadensis HOM05D006557 ORTHO05D008177 7.8e-194 681.0 572 61.7
Migut.B01677 Erythranthe guttata HOM05D006557 ORTHO05D008177 3.0e-193 679.1 569 61.9
Thhalv10007294m.g Eutrema salsugineum HOM05D006557 ORTHO05D008177 3.0e-193 679.1 575 62.3
Carub.0001s0032 Capsella rubella HOM05D006557 ORTHO05D008177 5.0e-193 678.3 565 61.6
Sp1g00380 Schrenkiella parvula HOM05D006557 ORTHO05D008177 1.1e-192 677.2 573 61.3
Dinv32417 Davidia involucrata HOM05D006557 ORTHO05D008177 1.9e-192 676.4 490 69.2
CARHR000440 Cardamine hirsuta HOM05D006557 ORTHO05D008177 3.3e-192 675.6 565 61.8
FAN10G0459 Fragaria x ananassa HOM05D006557 ORTHO05D008177 3.3e-192 675.6 563 61.1
Peaxi162Scf00021g00314 Petunia axillaris HOM05D006557 ORTHO05D008177 3.3e-192 675.6 586 60.6
MELO3C024600.2 Cucumis melo HOM05D006557 ORTHO05D008177 9.5e-192 674.1 588 59.7
Nitab4.5_0009025g0010 Nicotiana tabacum HOM05D006557 ORTHO05D008177 2.1e-191 672.9 592 61.0
TPR.G37774 Trifolium pratense HOM05D006557 ORTHO05D008177 8.0e-191 671.0 567 60.8
EL10Ac1g00969 Beta vulgaris HOM05D006557 ORTHO05D008177 1.1e-190 670.6 568 60.4
AL1G10410 Arabidopsis lyrata HOM05D006557 ORTHO05D008177 3.1e-190 669.1 568 60.6
Nitab4.5_0006706g0040 Nicotiana tabacum HOM05D006557 ORTHO05D008177 1.5e-189 666.8 619 58.3
Rhsim01G0154800 Rhododendron simsii HOM05D006557 ORTHO05D008177 3.4e-189 665.6 617 58.3
Aa31LG1G11240 Aethionema arabicum HOM05D006557 ORTHO05D008177 3.2e-187 659.1 611 57.9
ClCG01G015140 Citrullus lanatus HOM05D006557 ORTHO05D008177 7.1e-187 657.9 597 58.5
ATR0757G115 Amborella trichopoda HOM05D006557 ORTHO05D008177 1.0e-185 654.1 569 57.6
SalBow3G2355 Salvia bowleyana HOM05D006557 ORTHO05D008177 2.3e-185 652.9 567 60.1
DCAR_008582 Daucus carota HOM05D006557 ORTHO05D008177 7.3e-184 647.9 560 59.6
BolC8t52906H Brassica oleracea HOM05D006557 ORTHO05D008177 8.1e-183 644.4 584 58.2
AUR62033372 Chenopodium quinoa HOM05D006557 ORTHO05D008177 1.1e-182 644.0 574 57.7
Psat3g112120 Pisum sativum HOM05D006557 ORTHO05D008177 2.7e-178 629.4 518 62.2
C08p53930 Brassica napus HOM05D006557 ORTHO05D008177 3.5e-178 629.0 585 57.6
BraA09t42268Z Brassica rapa HOM05D006557 ORTHO05D008177 6.0e-178 628.2 608 56.6
Lj9A576T36 Lonicera japonica HOM05D006557 ORTHO05D008177 2.1e-175 619.8 505 63.8
vmacro04846 Vaccinium macrocarpon HOM05D006557 ORTHO05D008177 6.0e-170 601.7 564 57.6
AUR62004285 Chenopodium quinoa HOM05D006557 ORTHO05D008177 1.1e-168 597.4 570 56.0
HPP92_025368 Vanilla planifolia HOM05D006557 ORTHO05D008177 2.8e-167 592.8 562 57.1
Zm00001eb269430 Zea mays HOM05D006557 ORTHO05D008177 3.4e-165 585.9 572 54.9
Os06g0127200 Oryza sativa ssp. japonica HOM05D006557 ORTHO05D008177 3.2e-163 579.3 570 55.1
AT1G01920 Arabidopsis thaliana HOM05D006557 ORTHO05D008177 7.9e-154 548.1 446 62.6
arahy.Tifrunner.gnm1.ann1.1L2ERA Arachis hypogaea HOM05D006557 ORTHO05D008177 1.1e-147 527.7 465 58.5
FAN06G3640 Fragaria x ananassa HOM05D006557 ORTHO05D008177 4.2e-147 525.8 686 45.2
unitig_8.g3814 Utricularia gibba HOM05D006557 ORTHO05D008177 9.6e-144 514.6 554 53.4
CAN.G170.58 Capsicum annuum HOM05D006557 ORTHO05D008177 2.0e-141 506.9 399 66.2
Dinv43750 Davidia involucrata HOM05D006557 ORTHO05D008177 2.9e-140 503.1 379 65.2
Haze_15235 Corylus avellana HOM05D006557 ORTHO05D008177 3.6e-130 469.5 427 59.5
MD02G1195100 Malus domestica HOM05D006557 ORTHO05D008177 7.4e-128 461.8 364 64.6
AagrBONN_evm.TU.Sc2ySwM_228.962 Anthoceros agrestis HOM05D006557 ORTHO05D008177 4.7e-122 442.6 610 41.5
Pp3c20_15200 Physcomitrium patens HOM05D006557 ORTHO05D008177 2.6e-120 436.8 626 42.3
Mapoly0052s0068 Marchantia polymorpha HOM05D006557 ORTHO05D008177 2.7e-114 416.8 625 41.8
VMungo1383G0754 Vigna mungo HOM05D006557 ORTHO05D008177 3.6e-106 389.8 321 61.4
CDE11G1252 Ceratophyllum demersum HOM05D006557 ORTHO05D008177 5.2e-105 386.0 335 58.5
SMO165G0089 Selaginella moellendorffii HOM05D006557 ORTHO05D008177 1.0e-97 361.7 583 39.1
Sabra14G0054700 Salix brachista HOM05D006557 ORTHO05D008177 4.9e-79 299.7 278 57.9
unitig_31.g34034 Utricularia gibba HOM05D006557 ORTHO05D008177 7.3e-75 285.8 401 46.1
Hma1.2p1_0033F.1_g020720 Hydrangea macrophylla HOM05D006557 ORTHO05D008177 6.0e-69 266.2 174 77.0
HPP92_025494 Vanilla planifolia HOM05D006557 ORTHO05D008177 5.2e-65 253.1 251 55.8
SGA_v2.0_scaffold95G28878 Striga asiatica HOM05D006557 ORTHO05D008177 4.7e-58 229.9 184 64.1
Haze_15236 Corylus avellana HOM05D006557 ORTHO05D008177 8.9e-57 225.7 137 78.1
CDE11G0468 Ceratophyllum demersum HOM05D006557 ORTHO05D008177 2.7e-45 187.6 171 56.7
CBR_g54105 Chara braunii HOM05D006557 ORTHO05D008177 1.3e-42 178.7 699 26.9
VMungo1383G3400 Vigna mungo HOM05D006557 ORTHO05D008177 2.2e-39 167.9 127 64.6
CSS0034846 Camellia sinensis var. sinensis HOM05D006557 ORTHO05D008177 1.4e-38 165.2 213 46.5
CAN.G170.57 Capsicum annuum HOM05D006557 ORTHO05D008177 3.8e-31 140.6 133 56.4
Cre07.g321200 Chlamydomonas reinhardtii HOM05D006557 ORTHO05D008177 2.4e-25 121.3 662 24.5
MD02G1195000 Malus domestica HOM05D006557 ORTHO05D008177 7.6e-24 116.3 100 61.0
SEGI_15167 Sequoiadendron giganteum HOM05D006557 ORTHO05D008177 4.2e-22 110.5 126 46.8
MCO11G922 Micromonas commoda HOM05D006557 ORTHO05D008177 4.3e-19 100.5 315 27.6
Glyma.15G277300 Glycine max HOM05D006557 ORTHO05D008177 5.0e-15 87.0 75 52.0
SEGI_29223 Sequoiadendron giganteum HOM05D006557 ORTHO05D008177 1.1e-14 85.9 111 44.1
Lj9A576G31 Lonicera japonica HOM05D006557 ORTHO05D008177 1.6e-13 82.0 87 52.9
Mapoly0036s0143 Marchantia polymorpha HOM05D006557 ORTHO05D048806 5.7e-11 73.6 348 23.0
Ca_26123_v3 Cicer arietinum L. HOM05D006557 ORTHO05D008177 8.2e-10 69.7 59 59.3
AagrBONN_evm.TU.Sc2ySwM_228.2416 Anthoceros agrestis HOM05D005456 ORTHO05D006805 2.4e-09 68.2 187 28.3
Eucgr.G02479 Eucalyptus grandis HOM05D005456 ORTHO05D006805 9.1e-09 66.2 226 24.3
Manes.01G033300 Manihot esculenta HOM05D005456 ORTHO05D006805 1.2e-08 65.9 194 29.9
PGR119G0095 Punica granatum HOM05D005456 ORTHO05D006805 2.6e-08 64.7 230 23.9
A09p38980 Brassica napus HOM05D005416 ORTHO05D007956 3.4e-08 64.3 316 23.7
VMungo0251G2245 Vigna mungo HOM05D005456 ORTHO05D006805 4.5e-08 63.9 169 32.0
Phvul.002G169400 Phaseolus vulgaris HOM05D005456 ORTHO05D006805 7.7e-08 63.2 182 26.4
Cpa.g.sc991.1 Carica papaya HOM05D005456 ORTHO05D006805 1.0e-07 62.8 188 28.2
Ca_08719_v3 Cicer arietinum L. HOM05D005456 ORTHO05D006805 2.2e-07 61.6 182 26.4
PGR119G2207 Punica granatum HOM05D005456 ORTHO05D006805 2.2e-07 61.6 179 26.8
SMO356G0148 Selaginella moellendorffii HOM05D005416 ORTHO05D007956 2.2e-07 61.6 328 22.0
Glyma.20G031600 Glycine max HOM05D005456 ORTHO05D006805 2.9e-07 61.2 169 32.0
Pp3c3_17260 Physcomitrium patens HOM05D005456 ORTHO05D006805 3.8e-07 60.8 190 26.8
Actinidia33219 Actinidia chinensis HOM05D005456 ORTHO05D006805 6.5e-07 60.1 189 25.9
Glyma.07G228300 Glycine max HOM05D005456 ORTHO05D006805 6.5e-07 60.1 169 30.8
Ah.02g129440 Amaranthus hybridus HOM05D005456 ORTHO05D006805 8.5e-07 59.7 185 26.5
HanXRQChr10g0308211 Helianthus annuus HOM05D006247 ORTHO05D007684 8.5e-07 59.7 191 25.7
Lj4g0024233 Lotus japonicus HOM05D005456 ORTHO05D006805 8.5e-07 59.7 169 31.4
CBR_g780 Chara braunii HOM05D005456 ORTHO05D006805 1.4e-06 58.9 193 29.5
Lalb_Chr16g0385691 Lupinus albus HOM05D005456 ORTHO05D006805 1.4e-06 58.9 182 26.4
arahy.Tifrunner.gnm1.ann1.HIV449 Arachis hypogaea HOM05D005456 ORTHO05D006805 1.9e-06 58.5 169 30.8
CiPaw.05G130300 Carya illinoinensis HOM05D005456 ORTHO05D006805 1.9e-06 58.5 187 26.2
AUR62005833 Chenopodium quinoa HOM05D005456 ORTHO05D006805 1.9e-06 58.5 186 26.9
Hma1.2p1_0354F.1_g133880 Hydrangea macrophylla HOM05D005456 ORTHO05D006805 1.9e-06 58.5 182 25.3
EL10Ac6g13252 Beta vulgaris HOM05D005456 ORTHO05D006805 2.5e-06 58.2 215 28.4
CDE07G0572 Ceratophyllum demersum HOM05D005456 ORTHO05D006805 2.5e-06 58.2 156 26.9
Dinv16685 Davidia involucrata HOM05D005456 ORTHO05D006805 2.5e-06 58.2 165 28.5
Oeu021071.2 Olea europaea HOM05D005456 ORTHO05D006805 2.5e-06 58.2 185 25.4
Ah.03g134770 Amaranthus hybridus HOM05D005456 ORTHO05D006805 4.2e-06 57.4 186 28.0
CANSAT64G0403 Cannabis sativa HOM05D005456 ORTHO05D006805 4.2e-06 57.4 169 29.0
ClCG09G021880 Citrullus lanatus HOM05D005456 ORTHO05D006805 4.2e-06 57.4 184 24.5
CSS0014292 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 7.2e-06 56.6 183 25.7
CSS0028557 Camellia sinensis var. sinensis HOM05D005456 ORTHO05D006805 7.2e-06 56.6 183 25.7
CARHR026460 Cardamine hirsuta HOM05D005416 ORTHO05D007956 7.2e-06 56.6 319 20.7
AUR62032826 Chenopodium quinoa HOM05D005456 ORTHO05D006805 7.2e-06 56.6 154 31.2
Ciclev10031325m.g Citrus clementina HOM05D005456 ORTHO05D006805 7.2e-06 56.6 184 25.5
Potri.008G090500 Populus trichocarpa HOM05D005456 ORTHO05D006805 7.2e-06 56.6 141 30.5
BraA09t39401Z Brassica rapa HOM05D005416 ORTHO05D007956 9.4e-06 56.2 310 21.9


User provided reference genes

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