Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 4.3e-148 528.1 288 100.0
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 8.6e-32 141.7 149 55.0
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 2.5e-31 140.2 286 37.8
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 9.5e-31 138.3 147 51.7
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 9.5e-31 138.3 163 50.9
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.2e-30 137.9 258 42.6
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.2e-30 137.9 312 35.3
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 2.8e-30 136.7 119 58.8
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 3.6e-30 136.3 139 53.2
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.7e-30 136.0 139 52.5
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 6.1e-30 135.6 151 53.0
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 6.1e-30 135.6 147 51.7
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 6.1e-30 135.6 286 37.4
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 8.0e-30 135.2 147 51.7
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.0e-29 134.8 123 58.5
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 2.3e-29 133.7 132 56.8
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 3.0e-29 133.3 129 58.9
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.0e-29 133.3 139 51.8
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.0e-29 132.9 290 36.6
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 5.2e-29 132.5 193 44.6
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 5.2e-29 132.5 131 58.8
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 5.2e-29 132.5 147 53.1
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 5.2e-29 132.5 131 58.8
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 5.2e-29 132.5 193 44.6
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.2e-28 131.3 124 53.2
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 1.5e-28 131.0 131 58.0
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 2.0e-28 130.6 128 57.8
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 3.4e-28 129.8 196 45.9
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.4e-28 129.8 229 40.2
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.7e-28 129.0 146 52.7
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 3.7e-27 126.3 219 42.5
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 3.7e-27 126.3 144 53.5
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 6.4e-27 125.6 130 58.5
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 8.3e-27 125.2 131 54.2
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.1e-26 124.8 187 44.4
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.4e-26 124.4 120 57.5
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 1.8e-26 124.0 242 39.3
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 3.2e-26 123.2 123 56.1
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 5.4e-26 122.5 240 41.2
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 7.0e-26 122.1 116 56.0
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 7.0e-26 122.1 125 53.6
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 9.2e-26 121.7 128 55.5
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 2.7e-25 120.2 123 55.3
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.5e-25 119.8 120 54.2
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 4.6e-25 119.4 253 36.4
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 5.9e-25 119.0 160 47.5
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 7.8e-25 118.6 241 36.5
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 7.8e-25 118.6 238 37.8
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 7.8e-25 118.6 263 36.9
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.0e-24 118.2 285 36.8
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-24 118.2 121 55.4
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.7e-24 117.5 123 54.5
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 3.0e-24 116.7 118 55.9
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.9e-24 116.3 117 51.3
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 5.0e-24 115.9 121 51.2
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.6e-24 115.2 122 54.9
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 5.6e-23 112.5 114 54.4
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 9.5e-23 111.7 75 72.0
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 1.2e-22 111.3 124 53.2
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.2e-22 111.3 117 49.6
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 3.6e-22 109.8 117 50.4
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 8.0e-22 108.6 117 47.0
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.0e-21 108.2 115 51.3
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.4e-21 107.8 127 52.0
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.8e-21 107.5 132 50.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.8e-21 107.5 111 50.5
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 4.0e-21 106.3 234 35.0
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 6.8e-21 105.5 77 64.9
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 8.9e-21 105.1 217 41.5
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 2.0e-20 104.0 65 73.8
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 3.4e-20 103.2 125 48.8
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 3.4e-20 103.2 120 52.5
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 4.4e-20 102.8 126 48.4
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 4.4e-20 102.8 68 67.6
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.3e-19 101.3 128 48.4
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 2.9e-19 100.1 69 68.1
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 3.7e-19 99.8 66 65.2
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 3.7e-19 99.8 128 47.7
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 8.3e-19 98.6 165 40.6
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.1e-18 98.2 123 46.3
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.1e-18 98.2 169 39.1
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.4e-18 97.8 107 46.7
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.9e-18 97.4 98 46.9
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.4e-18 97.1 90 57.8
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.4e-18 97.1 118 50.8
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.4e-18 97.1 90 57.8
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 4.1e-18 96.3 214 31.3
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 5.4e-18 95.9 72 63.9
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 7.0e-18 95.5 123 48.0
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 7.0e-18 95.5 67 65.7
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 9.2e-18 95.1 123 48.0
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.2e-18 95.1 112 49.1
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 9.2e-18 95.1 64 67.2
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 9.2e-18 95.1 64 67.2
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-17 94.7 118 50.0
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.0e-17 94.0 118 50.8
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.0e-17 94.0 242 35.1
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 2.7e-17 93.6 76 57.9
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 6.0e-17 92.4 78 57.7
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 7.8e-17 92.0 125 47.2
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 2.3e-16 90.5 86 55.8
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 3.0e-16 90.1 75 62.7
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.9e-16 89.7 121 42.1
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.9e-16 89.7 141 38.3
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 3.9e-16 89.7 77 55.8
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.6e-16 89.0 116 46.6
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-15 88.2 140 39.3
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.1e-15 88.2 190 33.7
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 1.5e-15 87.8 141 37.6
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 1.9e-15 87.4 140 42.9
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.5e-15 87.0 131 42.7
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.3e-15 86.7 121 40.5
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 4.3e-15 86.3 66 60.6
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 5.6e-15 85.9 119 42.0
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.5e-15 85.1 112 47.3
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 9.5e-15 85.1 124 43.5
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 1.6e-14 84.3 173 33.5
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.6e-14 83.2 112 45.5
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 3.6e-14 83.2 160 38.8
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.1e-13 81.6 169 36.1
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 1.4e-13 81.3 114 43.0
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 4.0e-13 79.7 94 52.1
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 4.0e-13 79.7 94 52.1
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 8.9e-13 78.6 178 34.3
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.5e-12 77.8 116 42.2
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 4.4e-12 76.3 112 42.0
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 9.8e-12 75.1 114 43.9
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 9.8e-12 75.1 115 44.3
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 9.8e-12 75.1 90 45.6
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.3e-11 74.7 118 42.4
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.7e-11 74.3 121 42.1
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.7e-11 74.3 121 39.7
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 2.9e-11 73.6 77 48.1
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 3.7e-11 73.2 92 48.9
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.4e-10 70.5 115 41.7
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 3.2e-10 70.1 136 39.0
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 1.2e-09 68.2 63 57.1
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 1.6e-09 67.8 77 50.6
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 1.6e-09 67.8 77 50.6
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 1.6e-09 67.8 97 38.1
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 4.6e-09 66.2 78 48.7
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 4.6e-09 66.2 117 40.2
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 7.8e-09 65.5 46 60.9
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 1.0e-08 65.1 126 40.5
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 1.0e-08 65.1 139 35.3
Lj3g0000197 Lotus japonicus HOM05D004622 ORTHO05D005431 1.0e-08 65.1 161 32.9
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 5.1e-08 62.8 149 35.6
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 8.6e-08 62.0 97 43.3
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.5e-07 61.2 123 37.4
Ca_01655_v3 Cicer arietinum L. HOM05D004622 ORTHO05D005431 1.9e-07 60.8 95 35.8
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.9e-07 60.8 121 36.4
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 2.5e-07 60.5 65 47.7
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 2.5e-07 60.5 88 43.2
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 5.6e-07 59.3 72 40.3
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 5.6e-07 59.3 128 34.4
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 7.3e-07 58.9 65 46.2
VMungo1309G1791 Vigna mungo HOM05D016564 ORTHO05D019006 7.3e-07 58.9 151 29.8
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.2e-06 58.2 131 30.5
MSTRG.12372 Avicennia marina HOM05D004622 ORTHO05D005431 1.6e-06 57.8 127 32.3
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 1.6e-06 57.8 67 46.3
TPR.G28946 Trifolium pratense HOM05D016564 ORTHO05D019006 1.6e-06 57.8 139 35.3
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 1.6e-06 57.8 119 36.1
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 2.1e-06 57.4 161 29.2
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 2.8e-06 57.0 172 29.7
PGR102G1757 Punica granatum HOM05D004622 ORTHO05D005431 2.8e-06 57.0 154 34.4
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 3.6e-06 56.6 69 40.6
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 3.6e-06 56.6 120 31.7
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 4.7e-06 56.2 70 40.0
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 4.7e-06 56.2 71 38.0
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 6.2e-06 55.8 114 37.7
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 6.2e-06 55.8 181 29.3
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 8.1e-06 55.5 109 35.8


User provided reference genes

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