Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 1.8e-198 695.7 333 100.0
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 1.1e-166 590.1 334 81.7
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 1.2e-165 586.6 334 82.0
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 2.6e-165 585.5 333 82.0
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 4.4e-165 584.7 327 84.4
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 5.8e-165 584.3 328 82.9
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 7.5e-165 583.9 326 83.4
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 2.9e-164 582.0 333 81.4
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 3.7e-164 581.6 316 85.4
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 6.4e-164 580.9 327 82.3
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 6.4e-164 580.9 321 84.7
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 8.3e-164 580.5 318 86.2
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 8.3e-164 580.5 316 84.8
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.1e-163 580.1 327 83.8
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 1.4e-163 579.7 330 82.7
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.9e-163 579.3 324 82.7
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 2.4e-163 578.9 327 83.5
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 2.4e-163 578.9 321 83.8
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 3.2e-163 578.6 329 81.8
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.2e-162 576.6 327 83.2
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 1.2e-162 576.6 324 83.6
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 1.2e-162 576.6 320 84.1
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 1.6e-162 576.2 315 84.1
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 2.1e-162 575.9 330 82.1
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 2.1e-162 575.9 330 82.1
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 2.7e-162 575.5 326 84.0
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.5e-162 575.1 330 82.4
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 3.5e-162 575.1 326 82.5
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 3.5e-162 575.1 326 82.5
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 4.6e-162 574.7 326 82.5
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 6.0e-162 574.3 326 82.8
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 6.0e-162 574.3 326 82.8
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 7.8e-162 573.9 320 83.1
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 7.8e-162 573.9 330 82.1
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.0e-161 573.5 333 81.1
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.0e-161 573.5 332 82.8
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 1.3e-161 573.2 335 81.8
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.7e-161 572.8 320 83.1
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 1.7e-161 572.8 323 83.6
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 2.3e-161 572.4 327 82.6
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 2.3e-161 572.4 333 82.0
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.3e-161 572.4 323 83.3
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 8.6e-161 570.5 325 81.5
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-160 570.1 320 82.8
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.1e-160 570.1 334 81.1
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 1.1e-160 570.1 319 83.4
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 1.5e-160 569.7 331 81.6
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 1.5e-160 569.7 327 82.6
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.9e-160 569.3 323 83.0
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.9e-160 569.3 333 81.4
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.5e-160 568.9 320 82.5
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 2.5e-160 568.9 332 79.8
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 4.3e-160 568.2 323 82.4
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 5.6e-160 567.8 330 80.3
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 5.6e-160 567.8 327 81.0
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 7.3e-160 567.4 326 82.5
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.2e-159 566.6 334 80.5
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 2.1e-159 565.8 333 81.1
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 2.8e-159 565.5 327 80.4
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 2.8e-159 565.5 331 78.5
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 2.8e-159 565.5 317 81.1
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 6.2e-159 564.3 329 81.8
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 8.1e-159 563.9 327 81.0
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 8.1e-159 563.9 327 82.3
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.4e-158 563.1 326 81.3
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.4e-158 563.1 312 84.0
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 1.8e-158 562.8 331 78.2
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 1.8e-158 562.8 331 78.2
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 3.1e-158 562.0 323 80.8
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 3.1e-158 562.0 326 81.0
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 3.1e-158 562.0 333 79.6
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 4.0e-158 561.6 340 77.1
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 6.8e-158 560.8 315 82.2
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 6.8e-158 560.8 328 81.1
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 1.5e-157 559.7 321 81.6
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 1.5e-157 559.7 327 79.2
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 1.5e-157 559.7 326 80.7
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 1.5e-157 559.7 326 80.7
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 7.6e-157 557.4 333 79.9
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 7.6e-157 557.4 331 77.3
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 7.6e-157 557.4 331 77.3
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 9.9e-157 557.0 325 81.5
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 2.9e-156 555.4 385 71.2
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 3.8e-156 555.1 309 84.8
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 1.4e-155 553.1 333 80.5
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.9e-155 552.7 321 80.4
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 2.4e-155 552.4 330 78.5
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 5.4e-155 551.2 317 81.7
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 2.7e-154 548.9 326 77.9
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 2.7e-154 548.9 330 77.6
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 1.0e-153 547.0 316 79.4
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 3.9e-153 545.0 308 82.1
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 5.1e-153 544.7 317 80.1
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 5.1e-153 544.7 320 79.7
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 1.5e-152 543.1 328 79.0
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 2.5e-152 542.3 312 81.1
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 5.6e-152 541.2 354 73.4
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.4e-150 536.6 319 78.4
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 2.4e-150 535.8 318 78.0
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 5.3e-150 534.6 316 79.1
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 6.9e-150 534.3 322 77.6
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 9.0e-150 533.9 330 77.3
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 2.6e-149 532.3 330 77.0
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.3e-148 530.0 327 77.7
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 3.5e-146 521.9 315 75.2
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 1.3e-145 520.0 319 76.2
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 2.1e-143 512.7 282 83.7
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 1.1e-142 510.4 323 73.7
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 5.3e-142 508.1 319 73.0
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 8.4e-140 500.7 318 77.4
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.2e-139 498.8 306 74.2
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 2.5e-136 489.2 276 83.3
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 5.8e-133 478.0 323 69.3
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 1.7e-132 476.5 281 80.4
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 2.4e-126 456.1 311 66.9
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 6.9e-126 454.5 310 66.5
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 4.5e-125 451.8 335 66.0
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.8e-121 439.9 319 63.0
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.8e-121 439.9 319 63.0
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 3.0e-121 439.1 253 79.8
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 2.1e-114 416.4 309 59.9
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 8.5e-108 394.4 229 79.9
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 5.9e-101 371.7 331 54.7
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 6.7e-97 358.2 257 67.3
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 7.7e-93 344.7 215 74.9
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 5.0e-92 342.0 315 52.7
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.8e-84 315.8 357 44.3
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 1.0e-68 264.6 360 38.9
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 1.7e-52 210.7 125 76.8
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 3.8e-31 139.8 82 78.0
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 2.3e-28 130.6 89 68.5
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 8.7e-20 102.1 68 69.1
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.1e-19 101.7 75 69.3
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 9.3e-14 82.0 47 74.5
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 2.3e-12 77.4 53 64.2
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 2.3e-12 77.4 52 71.2
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 2.3e-12 77.4 41 78.0
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 6.2e-10 69.3 55 58.2


User provided reference genes

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