Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 4.3e-201 705.7 823 100.0
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.2e-70 272.3 748 76.1
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 1.4e-66 258.8 666 85.6
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 1.7e-64 251.9 659 86.0
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 2.9e-64 251.1 661 85.0
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 4.1e-63 247.3 671 84.6
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 7.1e-63 246.5 780 72.2
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 9.2e-63 246.1 676 78.8
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 1.2e-62 245.7 670 84.0
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 1.6e-62 245.4 786 77.1
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.3e-61 242.3 670 83.7
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 2.3e-61 241.5 667 77.2
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 3.0e-61 241.1 736 77.2
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.9e-61 240.7 670 83.7
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.5e-60 238.8 683 83.3
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 2.5e-60 238.0 683 82.9
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 3.3e-60 237.7 676 78.4
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.6e-59 235.3 781 75.3
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 2.1e-59 235.0 765 76.2
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 3.6e-59 234.2 757 73.1
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 8.1e-59 233.0 815 73.9
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.8e-58 231.9 680 78.1
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 8.9e-58 229.6 681 77.4
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.7e-56 225.3 666 83.3
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 4.9e-56 223.8 676 82.4
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 6.4e-56 223.4 795 70.9
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 1.9e-55 221.9 726 67.5
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 3.2e-55 221.1 666 83.5
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.1e-54 218.4 678 82.4
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 3.5e-54 217.6 795 69.9
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 7.8e-54 216.5 667 77.5
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 2.3e-53 214.9 280 60.0
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 5.1e-53 213.8 775 73.8
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 5.1e-53 213.8 776 74.0
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 5.1e-53 213.8 666 83.8
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.5e-52 212.2 783 74.1
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 3.3e-52 211.1 661 84.0
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 4.3e-52 210.7 756 72.8
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 7.3e-52 209.9 284 76.4
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 9.6e-52 209.5 668 73.8
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.6e-51 208.8 655 79.2
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 2.1e-51 208.4 286 79.7
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 4.7e-51 207.2 392 64.8
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.1e-50 206.1 671 77.9
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 3.1e-50 204.5 410 63.9
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 4.0e-50 204.1 668 77.5
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 6.9e-50 203.4 678 80.1
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 9.0e-50 203.0 139 71.9
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 9.0e-50 203.0 667 77.4
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.2e-49 202.6 778 73.5
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 2.0e-49 201.8 667 77.4
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 2.6e-49 201.4 299 62.2
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 3.4e-49 201.1 139 68.3
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 9.9e-49 199.5 249 53.4
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 2.2e-48 198.4 680 69.0
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 4.9e-48 197.2 201 56.2
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 1.1e-47 196.1 298 66.8
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 1.9e-47 195.3 313 67.4
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 2.4e-47 194.9 265 47.2
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.4e-47 194.9 289 77.2
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 2.4e-47 194.9 184 60.9
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 5.4e-47 193.7 141 67.4
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 7.1e-47 193.4 378 59.0
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 9.3e-47 193.0 151 63.6
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 9.3e-47 193.0 800 70.9
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.6e-46 192.2 150 66.0
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 4.6e-46 190.7 802 70.4
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.6e-46 190.7 434 52.3
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 6.0e-46 190.3 139 66.9
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 7.8e-46 189.9 139 65.5
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 7.8e-46 189.9 775 72.8
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 1.0e-45 189.5 660 82.6
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 3.9e-45 187.6 207 58.0
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.9e-45 187.6 404 57.4
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 5.1e-45 187.2 198 54.5
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 5.1e-45 187.2 301 73.8
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 6.6e-45 186.8 198 54.5
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 6.6e-45 186.8 198 54.5
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 8.7e-45 186.4 126 69.8
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.1e-44 186.0 277 49.5
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.9e-44 185.3 123 71.5
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 2.5e-44 184.9 244 51.2
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 3.3e-44 184.5 282 56.0
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 5.6e-44 183.7 140 66.4
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 9.6e-44 183.0 248 50.4
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 2.1e-43 181.8 210 51.0
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 2.1e-43 181.8 210 51.0
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 2.1e-43 181.8 632 80.1
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 3.6e-43 181.0 243 48.1
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 6.2e-43 180.3 637 83.7
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 1.1e-42 179.5 273 45.4
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 1.4e-42 179.1 147 61.2
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 1.8e-42 178.7 210 50.5
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 9.0e-42 176.4 267 48.3
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 9.0e-42 176.4 241 48.5
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.5e-41 175.6 780 67.8
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 5.8e-41 173.7 647 81.9
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 1.3e-40 172.6 124 66.9
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 5.4e-39 167.2 140 56.4
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 7.9e-38 163.3 140 60.7
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 1.1e-36 159.5 111 69.4
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 1.9e-36 158.7 119 61.3
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 7.4e-36 156.8 112 68.8
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 9.6e-36 156.4 309 58.9
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 9.0e-34 149.8 109 67.9
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 3.4e-33 147.9 110 62.7
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 9.9e-33 146.4 111 69.4
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 2.2e-32 145.2 281 60.9
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 4.2e-31 141.0 101 68.3
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 7.1e-31 140.2 107 63.6
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 1.0e-29 136.3 107 63.6
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.8e-29 135.6 139 53.2
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 3.9e-29 134.4 114 58.8
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 6.2e-27 127.1 111 60.4
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 8.2e-27 126.7 283 57.6
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.1e-26 124.8 106 60.4
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 2.2e-24 118.6 107 57.0
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 9.3e-23 113.2 77 72.7
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.2e-22 112.8 111 50.5
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 2.1e-22 112.1 100 57.0
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 5.1e-21 107.5 79 63.3
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 8.2e-19 100.1 91 59.3
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 3.1e-18 98.2 83 60.2
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 1.5e-17 95.9 103 50.5
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 2.2e-16 92.0 95 48.4
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 3.8e-16 91.3 80 55.0
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 1.3e-11 76.3 50 74.0
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 1.7e-11 75.9 57 61.4
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 6.9e-10 70.5 46 71.7
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 6.9e-10 70.5 65 53.8
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 1.3e-08 66.2 116 31.0
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 3.8e-08 64.7 116 31.0
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 8.5e-08 63.5 102 34.3
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 8.5e-08 63.5 143 28.7
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 1.1e-07 63.2 116 30.2
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 1.4e-07 62.8 116 29.3
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.9e-07 62.4 116 32.8
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 1.9e-07 62.4 94 38.3
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 4.2e-07 61.2 148 31.1
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 4.2e-07 61.2 116 28.4
Lsat_1_v5_gn_4_106880 Lactuca sativa HOM05D004079 ORTHO05D005437 5.5e-07 60.8 102 36.3
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 5.5e-07 60.8 116 28.4
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 7.2e-07 60.5 45 60.0
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 9.4e-07 60.1 101 32.7
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 1.6e-06 59.3 102 32.4
CAN.G999.30 Capsicum annuum HOM05D004079 ORTHO05D005437 2.7e-06 58.5 95 37.9
Peaxi162Scf00009g00051 Petunia axillaris HOM05D004079 ORTHO05D005437 2.7e-06 58.5 133 30.1
Rhsim12G0159600 Rhododendron simsii HOM05D004079 ORTHO05D005437 2.7e-06 58.5 135 31.1
SalBow3G2352 Salvia bowleyana HOM05D006740 ORTHO05D008571 2.7e-06 58.5 111 29.7
TAR623G1146 Trochodendron aralioides HOM05D005973 ORTHO05D007285 2.7e-06 58.5 116 29.3
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 3.6e-06 58.2 97 32.0
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 3.6e-06 58.2 102 31.4
BcaC05g25795 Brassica carinata HOM05D004079 ORTHO05D005437 4.7e-06 57.8 122 30.3
C05p17340 Brassica napus HOM05D004079 ORTHO05D005437 4.7e-06 57.8 122 30.3
BolC5t30434H Brassica oleracea HOM05D004079 ORTHO05D005437 4.7e-06 57.8 122 30.3
SalBow3G1009 Salvia bowleyana HOM05D006740 ORTHO05D008571 4.7e-06 57.8 111 29.7
Solyc03g113380.4 Solanum lycopersicum HOM05D004079 ORTHO05D005437 4.7e-06 57.8 95 35.8
Sopen03g032430 Solanum pennellii HOM05D004079 ORTHO05D005437 4.7e-06 57.8 95 35.8
PGSC0003DMG400013180 Solanum tuberosum HOM05D004079 ORTHO05D005437 4.7e-06 57.8 95 35.8
Hma1.2p1_0579F.1_g182710 Hydrangea macrophylla HOM05D005973 ORTHO05D007285 6.1e-06 57.4 116 27.6
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 6.1e-06 57.4 117 29.1
ECA232G1217 Erigeron canadensis HOM05D004079 ORTHO05D005437 7.9e-06 57.0 88 38.6


User provided reference genes

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