Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 1.0e-85 320.1 168 100.0
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 7.9e-54 214.2 165 69.7
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 1.4e-53 213.4 159 74.2
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.4e-53 213.4 158 72.8
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.8e-53 213.0 148 75.0
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 1.8e-53 213.0 158 73.4
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 3.0e-53 212.2 163 73.0
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 6.7e-53 211.1 160 73.8
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 8.8e-53 210.7 164 72.6
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 1.5e-52 209.9 161 72.7
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.5e-52 209.9 167 68.3
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 2.5e-52 209.1 166 71.1
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 2.5e-52 209.1 165 69.1
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 3.3e-52 208.8 159 72.3
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 4.3e-52 208.4 158 74.1
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 5.7e-52 208.0 161 72.7
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 7.4e-52 207.6 158 72.8
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 9.7e-52 207.2 138 76.8
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 9.7e-52 207.2 138 76.8
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 2.8e-51 205.7 168 66.1
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 3.7e-51 205.3 160 70.6
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 4.8e-51 204.9 139 76.3
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 4.8e-51 204.9 139 76.3
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 4.8e-51 204.9 139 76.3
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 4.8e-51 204.9 160 69.4
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 8.2e-51 204.1 160 70.6
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 8.2e-51 204.1 137 76.6
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 8.2e-51 204.1 135 79.3
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 1.1e-50 203.8 138 77.5
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 1.8e-50 203.0 139 76.3
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 2.4e-50 202.6 138 76.8
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 2.4e-50 202.6 138 76.8
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 3.1e-50 202.2 139 77.0
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 3.1e-50 202.2 161 70.8
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 4.1e-50 201.8 158 70.3
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 6.9e-50 201.1 161 70.2
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 9.1e-50 200.7 161 70.8
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 9.1e-50 200.7 158 69.6
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 9.1e-50 200.7 159 71.1
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 1.5e-49 199.9 145 72.4
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 1.5e-49 199.9 145 72.4
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.5e-49 199.9 161 71.4
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 2.0e-49 199.5 163 68.7
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 2.0e-49 199.5 163 69.3
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 2.0e-49 199.5 163 69.3
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 2.0e-49 199.5 161 66.5
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 2.6e-49 199.1 161 69.6
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 2.6e-49 199.1 161 69.6
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 2.6e-49 199.1 161 69.6
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 2.6e-49 199.1 163 69.3
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 2.6e-49 199.1 165 67.9
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 3.4e-49 198.7 163 69.3
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 3.4e-49 198.7 163 69.3
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 4.5e-49 198.4 160 67.5
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 5.9e-49 198.0 159 67.9
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 5.9e-49 198.0 161 68.3
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 5.9e-49 198.0 161 69.6
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 5.9e-49 198.0 161 69.6
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 1.3e-48 196.8 159 67.9
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 1.7e-48 196.4 139 74.1
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 2.2e-48 196.1 162 68.5
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 2.2e-48 196.1 160 66.9
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 2.9e-48 195.7 147 72.1
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 2.9e-48 195.7 140 72.1
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 3.8e-48 195.3 164 68.9
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 6.5e-48 194.5 108 87.0
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 6.5e-48 194.5 160 66.2
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 8.5e-48 194.1 160 68.1
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 8.5e-48 194.1 138 74.6
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 1.1e-47 193.7 167 65.3
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 1.1e-47 193.7 137 75.2
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 1.4e-47 193.4 100 94.0
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 1.4e-47 193.4 165 67.9
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 1.4e-47 193.4 137 75.2
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 1.4e-47 193.4 137 74.5
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 1.9e-47 193.0 130 76.2
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 2.5e-47 192.6 100 92.0
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 5.5e-47 191.4 158 68.4
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 5.5e-47 191.4 162 69.1
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 5.5e-47 191.4 158 67.1
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 7.2e-47 191.0 166 66.9
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 9.4e-47 190.7 163 66.3
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 9.4e-47 190.7 139 73.4
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 9.4e-47 190.7 139 74.1
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 9.4e-47 190.7 135 74.8
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 1.2e-46 190.3 158 68.4
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 1.2e-46 190.3 147 72.8
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 1.6e-46 189.9 158 68.4
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 2.1e-46 189.5 138 73.2
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 2.1e-46 189.5 103 89.3
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 2.7e-46 189.1 169 64.5
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 2.7e-46 189.1 132 75.0
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 3.6e-46 188.7 147 65.3
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 3.6e-46 188.7 158 66.5
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 3.6e-46 188.7 140 72.1
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 1.4e-45 186.8 142 71.8
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 1.4e-45 186.8 135 72.6
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.8e-45 186.4 137 73.0
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 1.8e-45 186.4 121 76.0
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 5.1e-45 184.9 137 72.3
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 5.1e-45 184.9 137 72.3
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 6.7e-45 184.5 162 67.3
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 2.0e-44 183.0 140 67.9
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 2.6e-44 182.6 160 65.0
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 7.4e-44 181.0 152 67.8
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.7e-43 179.9 166 61.4
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.7e-43 179.9 153 64.7
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 4.8e-43 178.3 166 61.4
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.4e-42 176.8 164 61.6
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.8e-42 176.4 168 60.1
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 1.6e-38 163.3 165 60.0
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 1.4e-37 160.2 79 94.9
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 1.8e-37 159.8 161 58.4
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 2.0e-36 156.4 96 81.2
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 1.7e-35 153.3 136 66.2
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 2.9e-32 142.5 97 69.1
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 5.2e-29 131.7 94 68.1
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 5.2e-29 131.7 162 46.3
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 3.4e-28 129.0 145 49.0
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 4.4e-28 128.6 97 61.9
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 2.2e-27 126.3 94 62.8
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 2.2e-27 126.3 158 51.3
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 6.5e-24 114.8 72 77.8
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 1.8e-18 96.7 71 64.8
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 2.4e-18 96.3 52 88.5
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 9.2e-18 94.4 90 52.2
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 1.6e-17 93.6 50 90.0
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 1.6e-17 93.6 50 90.0
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 6.6e-16 88.2 86 53.5
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 1.2e-12 77.4 120 40.0


User provided reference genes

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