Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 3.5e-109 398.3 198 100.0
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 2.0e-19 100.1 168 45.2
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 5.7e-19 98.6 157 43.9
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.7e-18 97.1 169 48.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.7e-18 97.1 170 44.7
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.3e-18 94.7 170 45.3
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.8e-17 93.6 144 45.1
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 3.1e-17 92.8 156 41.7
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.7e-16 89.7 154 42.2
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.5e-16 89.4 153 43.1
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 5.9e-16 88.6 167 41.3
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 7.7e-16 88.2 147 42.9
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.0e-15 87.8 161 41.6
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.3e-15 87.4 168 39.9
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.7e-15 87.0 155 44.5
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 2.9e-15 86.3 172 36.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 5.0e-15 85.5 143 42.0
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.1e-14 84.3 155 38.1
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.5e-14 84.0 160 39.4
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.5e-14 83.2 164 38.4
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 5.5e-14 82.0 157 38.9
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.2e-13 80.9 152 45.4
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.2e-13 80.9 174 42.5
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.2e-13 80.9 158 44.9
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 2.7e-13 79.7 154 39.6
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 2.7e-13 79.7 161 39.1
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 8.0e-13 78.2 156 40.4
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 8.0e-13 78.2 157 35.0
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.0e-12 77.8 144 40.3
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 1.0e-12 77.8 164 37.8
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.8e-12 77.0 95 50.5
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.3e-12 76.6 159 40.3
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 3.0e-12 76.3 175 38.3
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 4.0e-12 75.9 53 66.0
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 4.0e-12 75.9 143 39.9
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 6.8e-12 75.1 159 36.5
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.8e-12 74.7 161 39.8
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.2e-11 74.3 73 57.5
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.2e-11 74.3 158 43.0
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.0e-11 73.6 144 39.6
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 2.0e-11 73.6 148 38.5
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.6e-11 73.2 65 60.0
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 2.6e-11 73.2 158 36.1
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 3.4e-11 72.8 160 40.0
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 4.4e-11 72.4 153 39.9
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 5.7e-11 72.0 67 59.7
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 7.5e-11 71.6 160 40.0
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.8e-11 71.2 148 39.9
Migut.J01657 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.3e-10 70.9 136 36.8
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 2.8e-10 69.7 83 53.0
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.8e-10 69.7 79 53.2
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 4.9e-10 68.9 141 33.3
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 8.3e-10 68.2 141 33.3
Rhsim04G0111200 Rhododendron simsii HOM05D002974 ORTHO05D002992 8.3e-10 68.2 126 38.9
Rhsim04G0112500 Rhododendron simsii HOM05D002974 ORTHO05D002992 8.3e-10 68.2 126 38.9
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 8.3e-10 68.2 77 48.1
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 3.1e-09 66.2 55 63.6
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.1e-09 66.2 178 36.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 4.1e-09 65.9 146 35.6
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 4.1e-09 65.9 74 55.4
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 1.2e-08 64.3 65 60.0
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 1.2e-08 64.3 155 31.0
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 1.2e-08 64.3 135 41.5
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.2e-08 64.3 62 56.5
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 1.6e-08 63.9 144 38.2
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 2.0e-08 63.5 74 52.7
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 2.7e-08 63.2 149 35.6
Zm00001eb352450 Zea mays HOM05D002974 ORTHO05D002992 2.7e-08 63.2 144 35.4
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 3.5e-08 62.8 167 31.7
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 3.5e-08 62.8 74 54.1
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 3.5e-08 62.8 72 51.4
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 3.5e-08 62.8 74 54.1
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 3.5e-08 62.8 72 54.2
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 4.5e-08 62.4 74 52.7
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 4.5e-08 62.4 100 43.0
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 7.7e-08 61.6 72 54.2
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 7.7e-08 61.6 93 48.4
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 7.7e-08 61.6 96 40.6
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 1.0e-07 61.2 74 52.7
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.0e-07 61.2 74 52.7
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.0e-07 61.2 74 52.7
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.0e-07 61.2 71 56.3
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 1.3e-07 60.8 72 51.4
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 1.3e-07 60.8 74 52.7
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 1.3e-07 60.8 74 52.7
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 1.3e-07 60.8 72 51.4
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 1.3e-07 60.8 72 51.4
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 1.3e-07 60.8 74 52.7
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.7e-07 60.5 136 35.3
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.7e-07 60.5 156 35.3
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.7e-07 60.5 61 55.7
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.7e-07 60.5 155 36.8
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 2.3e-07 60.1 164 31.1
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 2.3e-07 60.1 53 62.3
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 2.3e-07 60.1 74 52.7
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 2.3e-07 60.1 47 66.0
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 2.3e-07 60.1 108 43.5
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 2.9e-07 59.7 76 51.3
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 2.9e-07 59.7 79 53.2
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 5.0e-07 58.9 50 62.0
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 5.0e-07 58.9 45 71.1
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.0e-07 58.9 138 39.9
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 6.6e-07 58.5 76 50.0
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 6.6e-07 58.5 74 51.4
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 6.6e-07 58.5 193 32.6
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 6.6e-07 58.5 158 33.5
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 6.6e-07 58.5 92 41.3
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 6.6e-07 58.5 149 35.6
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.6e-07 58.5 129 42.6
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 6.6e-07 58.5 62 50.0
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 6.6e-07 58.5 75 50.7
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.6e-07 58.2 161 33.5
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 8.6e-07 58.2 54 53.7
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 8.6e-07 58.2 59 57.6
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 1.1e-06 57.8 90 47.8
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 1.1e-06 57.8 76 46.1
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.5e-06 57.4 62 53.2
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.9e-06 57.0 54 61.1
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.5e-06 56.6 161 33.5
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.5e-06 56.6 91 40.7
unitig_748.g7224 Utricularia gibba HOM05D002974 ORTHO05D002992 2.5e-06 56.6 65 49.2
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 3.3e-06 56.2 66 53.0
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 3.3e-06 56.2 66 53.0
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.3e-06 56.2 70 50.0
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.3e-06 56.2 161 33.5
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 3.3e-06 56.2 67 53.7
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 3.3e-06 56.2 148 35.1
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 3.3e-06 56.2 50 62.0
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 4.3e-06 55.8 64 50.0
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 4.3e-06 55.8 155 35.5
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 4.3e-06 55.8 45 62.2
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 5.6e-06 55.5 74 50.0
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 5.6e-06 55.5 40 67.5
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 5.6e-06 55.5 107 41.1
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 7.3e-06 55.1 68 48.5
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 7.3e-06 55.1 68 48.5
Potri.019G013300 Populus trichocarpa HOM05D011447 ORTHO05D010069 7.3e-06 55.1 88 40.9
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 7.3e-06 55.1 80 45.0
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 7.3e-06 55.1 49 57.1
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 7.3e-06 55.1 73 49.3
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 7.3e-06 55.1 96 44.8
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 9.5e-06 54.7 69 49.3
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 9.5e-06 54.7 59 50.8
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 9.5e-06 54.7 45 60.0
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 9.5e-06 54.7 107 38.3


User provided reference genes

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