Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3971 Punica granatum HOM05D008339 ORTHO05D009712 8.1e-97 357.1 179 100.0
PGR031G0599 Punica granatum HOM05D008339 ORTHO05D009712 3.8e-78 295.0 179 81.6
Sabra05G0018000 Salix brachista HOM05D008339 ORTHO05D009712 5.3e-32 141.7 173 45.1
Potri.005G007100 Populus trichocarpa HOM05D008339 ORTHO05D009712 1.0e-30 137.5 172 43.0
Cfa012848 Carpinus fangiana HOM05D008339 ORTHO05D009712 1.6e-28 130.2 180 39.4
MD12G1203300 Malus domestica HOM05D008339 ORTHO05D009712 1.0e-27 127.5 174 39.1
Sed0007759 Sechium edule HOM05D008339 ORTHO05D009712 1.8e-27 126.7 151 44.4
Sabra05G0006500 Salix brachista HOM05D008339 ORTHO05D009712 2.3e-27 126.3 141 47.5
Prupe.6G309300 Prunus persica HOM05D008339 ORTHO05D009712 3.9e-27 125.6 160 40.6
PGR004G1038 Punica granatum HOM05D008339 ORTHO05D009712 5.2e-27 125.2 177 39.0
Thecc.05G309700 Theobroma cacao HOM05D008339 ORTHO05D009712 1.1e-26 124.0 156 41.7
ClCG02G014760 Citrullus lanatus HOM05D008339 ORTHO05D009712 3.3e-26 122.5 164 40.9
Ciclev10013648m.g Citrus clementina HOM05D008339 ORTHO05D009712 2.2e-25 119.8 174 40.8
Haze_08675 Corylus avellana HOM05D008339 ORTHO05D009712 2.2e-25 119.8 171 40.9
TWI12G1182 Tripterygium wilfordii HOM05D008339 ORTHO05D009712 2.8e-25 119.4 171 40.9
MELO3C031525.2 Cucumis melo HOM05D008339 ORTHO05D009712 6.3e-25 118.2 152 43.4
MD12G1203400 Malus domestica HOM05D008339 ORTHO05D009712 1.1e-24 117.5 171 40.4
PGR031G2810 Punica granatum HOM05D008339 ORTHO05D009712 1.1e-24 117.5 145 43.4
Rhsim11G0099000 Rhododendron simsii HOM05D008339 ORTHO05D009712 1.4e-24 117.1 176 36.4
MELO3C004166.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.8e-24 116.7 152 42.8
MELO3C004156.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.4e-24 116.3 152 42.8
MELO3C004168.2 Cucumis melo HOM05D008339 ORTHO05D009712 9.1e-24 114.4 152 42.1
Prupe.6G309200 Prunus persica HOM05D008339 ORTHO05D009712 1.5e-21 107.1 169 36.7
Cpa.g.sc48.196 Carica papaya HOM05D008339 ORTHO05D009712 1.9e-21 106.7 154 37.7
Sabra13G0004800 Salix brachista HOM05D008339 ORTHO05D009712 2.5e-21 106.3 169 39.6
CANSAT54G0094 Cannabis sativa HOM05D008339 ORTHO05D009712 4.2e-21 105.5 158 36.7
CsaV3_2G007240 Cucumis sativus L. HOM05D008339 ORTHO05D007109 7.2e-21 104.8 155 37.4
Gorai.007G298200 Gossypium raimondii HOM05D008339 ORTHO05D009712 7.2e-21 104.8 132 41.7
RcHm_v2.0_Chr3g0457691 Rosa chinensis HOM05D008339 ORTHO05D009712 2.1e-20 103.2 181 35.4
CANSAT54G1683 Cannabis sativa HOM05D008339 ORTHO05D009712 4.7e-20 102.1 158 36.1
Gohir.D11G276100 Gossypium hirsutum HOM05D008339 ORTHO05D009712 4.7e-20 102.1 132 41.7
ClCG02G014750 Citrullus lanatus HOM05D008339 ORTHO05D013640 1.8e-19 100.1 153 39.2
AUR62000433 Chenopodium quinoa HOM05D000060 ORTHO05D004147 8.8e-19 97.8 152 36.2
FAN02G4119 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.2e-18 97.4 171 35.7
MD12G1203500 Malus domestica HOM05D008339 ORTHO05D009712 1.5e-18 97.1 165 33.3
MELO3C031306.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.6e-18 96.3 141 39.7
FvH4_6g08020 Fragaria vesca HOM05D008339 ORTHO05D009712 2.6e-18 96.3 171 36.3
FAN14G1454 Fragaria x ananassa HOM05D008339 ORTHO05D009712 2.6e-18 96.3 171 36.3
FAN05G1492 Fragaria x ananassa HOM05D008339 ORTHO05D009712 3.4e-18 95.9 146 39.0
Sed0011112 Sechium edule HOM05D008339 ORTHO05D009712 1.3e-17 94.0 151 36.4
MELO3C031307.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.7e-17 92.4 138 39.1
MELO3C004157.2 Cucumis melo HOM05D008339 ORTHO05D009712 1.4e-16 90.5 139 41.7
FvH4_6g07980 Fragaria vesca HOM05D008339 ORTHO05D009712 1.8e-16 90.1 176 32.4
FAN14G5780 Fragaria x ananassa HOM05D008339 ORTHO05D009712 1.8e-16 90.1 176 32.4
Sabra11G0113000 Salix brachista HOM05D008339 ORTHO05D009712 1.8e-16 90.1 98 46.9
TAR362G0027 Trochodendron aralioides HOM05D008339 ORTHO05D009712 7.0e-16 88.2 150 34.7
Ah.06g196240 Amaranthus hybridus HOM05D008339 ORTHO05D009712 2.0e-15 86.7 160 35.0
PGR031G3403 Punica granatum HOM05D008339 ORTHO05D009712 1.0e-14 84.3 140 35.7
Eucgr.E00366 Eucalyptus grandis HOM05D008339 ORTHO05D009712 1.7e-14 83.6 154 33.8
MELO3C031308.2 Cucumis melo HOM05D008339 ORTHO05D009712 8.5e-14 81.3 128 35.2
BraA06t23824Z Brassica rapa HOM05D009911 ORTHO05D009712 2.1e-12 76.6 163 30.1
MELO3C004164.2 Cucumis melo HOM05D008339 ORTHO05D009712 2.1e-12 76.6 158 34.8
CARHR178520 Cardamine hirsuta HOM05D013394 ORTHO05D009712 2.7e-12 76.3 173 27.7
THA.LOC104816853 Tarenaya hassleriana HOM05D009911 ORTHO05D009712 6.1e-12 75.1 148 29.1
A06p06110 Brassica napus HOM05D009911 ORTHO05D009712 1.4e-11 73.9 163 29.4
Migut.G00780 Erythranthe guttata HOM05D009933 ORTHO05D012084 1.4e-11 73.9 178 30.3
AT1G09360 Arabidopsis thaliana HOM05D013394 ORTHO05D009712 2.6e-10 69.7 167 31.1
FAN05G4801 Fragaria x ananassa HOM05D008339 ORTHO05D009712 2.6e-10 69.7 88 42.0
Oeu043429.1 Olea europaea HOM05D009933 ORTHO05D012084 2.6e-10 69.7 167 28.1
AL1G19880 Arabidopsis lyrata HOM05D009911 ORTHO05D009712 3.4e-10 69.3 156 26.9
Oeu043379.1 Olea europaea HOM05D009933 ORTHO05D012084 3.4e-10 69.3 172 29.1
Thhalv10009653m.g Eutrema salsugineum HOM05D009911 ORTHO05D009712 4.4e-10 68.9 145 29.7
Carub.0001s0870 Capsella rubella HOM05D013394 ORTHO05D009712 5.7e-10 68.6 172 28.5
Prupe.1G205300 Prunus persica HOM05D008339 ORTHO05D009712 5.7e-10 68.6 146 30.1
CARHR009330 Cardamine hirsuta HOM05D009911 ORTHO05D009712 7.5e-10 68.2 171 25.7
Sp1g07980 Schrenkiella parvula HOM05D009911 ORTHO05D009712 9.8e-10 67.8 145 29.0
Haze_04054 Corylus avellana HOM05D008339 ORTHO05D009712 1.3e-09 67.4 173 28.3
CARHR178500 Cardamine hirsuta HOM05D013394 ORTHO05D009712 2.2e-09 66.6 166 25.9
C05p07380 Brassica napus HOM05D009911 ORTHO05D009712 2.8e-09 66.2 169 25.4
MELO3C031309.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.7e-09 65.9 93 40.9
Thhalv10009592m.g Eutrema salsugineum HOM05D013394 ORTHO05D009712 3.7e-09 65.9 149 28.2
AT1G09370 Arabidopsis thaliana HOM05D009911 ORTHO05D009712 4.9e-09 65.5 156 25.6
SGA_v2.0_scaffold74G24613 Striga asiatica HOM05D009933 ORTHO05D012084 6.3e-09 65.1 177 28.8
SGA_v2.0_scaffold74G24614 Striga asiatica HOM05D008339 ORTHO05D009712 6.3e-09 65.1 119 31.1
Carub.0001s0871 Capsella rubella HOM05D009911 ORTHO05D009712 1.1e-08 64.3 143 26.6
SalBow7G2832 Salvia bowleyana HOM05D009933 ORTHO05D012084 1.1e-08 64.3 160 25.6
Sp5g12740 Schrenkiella parvula HOM05D009945 ORTHO05D012028 1.1e-08 64.3 172 28.5
BolC8t50245H Brassica oleracea HOM05D009945 ORTHO05D012028 1.4e-08 63.9 172 28.5
SalBow7G3223 Salvia bowleyana HOM05D009933 ORTHO05D012084 1.4e-08 63.9 162 25.3
SalBow7G3334 Salvia bowleyana HOM05D000059 ORTHO05D012084 1.4e-08 63.9 171 25.1
BraA06t23825Z Brassica rapa HOM05D009911 ORTHO05D009712 1.8e-08 63.5 160 27.5
A06p06120 Brassica napus HOM05D009911 ORTHO05D009712 2.4e-08 63.2 160 27.5
BolC5t29496H Brassica oleracea HOM05D009911 ORTHO05D009712 2.4e-08 63.2 160 26.9
C05p07390 Brassica napus HOM05D009911 ORTHO05D009712 3.1e-08 62.8 160 27.5
MELO3C031523.2 Cucumis melo HOM05D008339 ORTHO05D009712 3.1e-08 62.8 95 41.1
BcaC07g39401 Brassica carinata HOM05D009945 ORTHO05D012028 4.1e-08 62.4 172 27.9
C08p24330 Brassica napus HOM05D009945 ORTHO05D012028 4.1e-08 62.4 172 27.9
BolC8t50051H Brassica oleracea HOM05D009945 ORTHO05D012028 4.1e-08 62.4 172 27.9
BcaC07g39575 Brassica carinata HOM05D009945 ORTHO05D012028 5.4e-08 62.0 172 27.9
C08p26270 Brassica napus HOM05D009945 ORTHO05D012028 5.4e-08 62.0 172 27.9
A06p18400 Brassica napus HOM05D009945 ORTHO05D012028 9.1e-08 61.2 172 27.3
BraA06t24921Z Brassica rapa HOM05D009945 ORTHO05D012028 9.1e-08 61.2 172 27.3
Thecc.01G319900 Theobroma cacao HOM05D008191 ORTHO05D010044 9.1e-08 61.2 145 28.3
Sp1g07970 Schrenkiella parvula HOM05D013394 ORTHO05D009712 1.2e-07 60.8 171 24.6
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 1.2e-07 60.8 173 25.4
BcaB01g00725 Brassica carinata HOM05D009945 ORTHO05D012028 1.6e-07 60.5 178 28.1
AT3G49330 Arabidopsis thaliana HOM05D009945 ORTHO05D012028 2.0e-07 60.1 155 27.7
AL5G29080 Arabidopsis lyrata HOM05D009945 ORTHO05D012028 2.7e-07 59.7 155 27.7
SGA_v2.0_scaffold74G24609 Striga asiatica HOM05D009933 ORTHO05D009712 2.7e-07 59.7 167 28.1
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 2.7e-07 59.7 165 27.3
Migut.I00636 Erythranthe guttata HOM05D009933 ORTHO05D012084 3.5e-07 59.3 167 25.1
THA.LOC104814943 Tarenaya hassleriana HOM05D009945 ORTHO05D012028 3.5e-07 59.3 176 26.1
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 1.0e-06 57.8 102 32.4
COL.COLO4_34577 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.3e-06 57.4 108 31.5
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 1.7e-06 57.0 135 25.2
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 2.9e-06 56.2 178 28.1
BcaC05g24790 Brassica carinata HOM05D009911 ORTHO05D009712 2.9e-06 56.2 162 24.1
BolC5t29493H Brassica oleracea HOM05D009911 ORTHO05D009712 2.9e-06 56.2 162 24.1
FAN02G0526 Fragaria x ananassa HOM05D000010 ORTHO05D004316 2.9e-06 56.2 95 34.7
Manes.08G115800 Manihot esculenta HOM05D001445 ORTHO05D003404 2.9e-06 56.2 160 24.4
Manes.08G115700 Manihot esculenta HOM05D001445 ORTHO05D003404 3.8e-06 55.8 160 24.4
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 5.0e-06 55.5 172 26.2
Aa31LG4G17890 Aethionema arabicum HOM05D009945 ORTHO05D012028 6.6e-06 55.1 179 25.7
CARHR189050 Cardamine hirsuta HOM05D009945 ORTHO05D012028 8.6e-06 54.7 164 23.2


User provided reference genes

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