Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 2.4e-103 379.4 283 100.0
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.2e-31 139.8 224 42.0
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 6.0e-30 135.6 220 42.7
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.3e-29 133.7 201 44.8
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 3.3e-28 129.8 201 52.7
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 1.6e-27 127.5 200 43.5
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 1.6e-27 127.5 199 42.7
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 2.1e-27 127.1 221 42.1
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 3.7e-27 126.3 228 40.8
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 4.8e-27 125.9 202 43.6
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 1.1e-26 124.8 195 46.2
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 1.8e-26 124.0 228 40.4
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.4e-26 123.6 212 46.7
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 4.0e-26 122.9 216 42.6
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 4.5e-25 119.4 205 43.9
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 5.8e-25 119.0 209 40.2
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 7.6e-25 118.6 217 43.8
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 3.8e-24 116.3 198 41.9
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 4.9e-24 115.9 210 41.4
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.9e-24 115.9 209 41.1
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 4.9e-24 115.9 208 38.9
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 8.4e-24 115.2 212 40.6
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.1e-23 114.8 201 40.8
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.2e-22 111.3 198 41.4
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 2.1e-22 110.5 208 40.9
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 2.7e-22 110.2 227 37.4
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.6e-22 109.4 200 39.5
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 6.0e-22 109.0 208 38.0
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 7.9e-22 108.6 205 43.9
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.3e-21 107.8 211 38.4
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 2.3e-21 107.1 200 39.5
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 6.7e-21 105.5 216 36.6
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.1e-20 104.8 195 40.0
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 1.1e-20 104.8 223 42.6
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 2.5e-20 103.6 204 39.2
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 2.5e-20 103.6 219 43.4
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 2.2e-19 100.5 210 36.7
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.7e-19 99.8 197 39.6
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 3.7e-19 99.8 208 37.5
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.1e-18 98.2 210 36.2
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 1.1e-18 98.2 211 37.0
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.8e-18 97.4 205 37.6
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 4.1e-18 96.3 200 43.0
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 6.9e-18 95.5 210 50.0
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 1.5e-17 94.4 200 41.0
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 2.0e-17 94.0 200 42.5
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.0e-17 94.0 195 38.5
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 2.6e-17 93.6 225 32.9
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.4e-17 93.2 209 34.4
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 4.5e-17 92.8 226 33.2
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 5.9e-17 92.4 206 43.2
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 7.7e-17 92.0 202 42.6
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 1.0e-16 91.7 196 40.3
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.0e-16 91.7 195 38.5
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 1.3e-16 91.3 195 37.9
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 1.7e-16 90.9 222 38.7
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.7e-16 90.9 206 36.9
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 2.2e-16 90.5 205 40.5
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.2e-16 90.5 195 36.9
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.8e-16 89.7 206 38.8
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 5.0e-16 89.4 202 35.1
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 5.0e-16 89.4 206 35.9
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 8.5e-16 88.6 207 31.4
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 1.1e-15 88.2 210 39.5
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.4e-15 87.8 214 41.6
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.9e-15 87.4 213 42.7
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 7.2e-15 85.5 199 36.7
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 9.4e-15 85.1 200 38.5
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 9.4e-15 85.1 212 38.7
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 9.4e-15 85.1 200 37.0
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 1.6e-14 84.3 194 36.6
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.6e-14 84.3 195 36.9
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 2.1e-14 84.0 206 40.3
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 2.1e-14 84.0 201 34.8
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 4.6e-14 82.8 196 32.7
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 4.6e-14 82.8 203 37.4
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 7.9e-14 82.0 216 36.6
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.0e-13 81.6 224 34.4
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.0e-13 81.6 210 34.8
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 2.3e-13 80.5 211 39.8
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 3.0e-13 80.1 196 40.3
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 3.9e-13 79.7 207 34.8
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 3.9e-13 79.7 196 34.2
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 5.1e-13 79.3 202 41.1
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 6.7e-13 79.0 199 43.7
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 2.0e-12 77.4 194 31.4
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 2.0e-12 77.4 203 32.0
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 2.0e-12 77.4 198 35.4
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.5e-12 77.0 196 32.7
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 2.5e-12 77.0 203 45.3
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 2.5e-12 77.0 196 35.2
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 9.7e-12 75.1 202 33.7
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 1.7e-11 74.3 201 33.3
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 2.2e-11 73.9 199 35.2
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 2.2e-11 73.9 199 35.2
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 2.2e-11 73.9 199 33.2
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 2.8e-11 73.6 209 36.8
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 6.3e-11 72.4 194 29.9
AUR62018697 Chenopodium quinoa HOM05D006310 ORTHO05D007768 6.3e-11 72.4 37 86.5
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 1.1e-10 71.6 193 39.9
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.4e-10 71.2 211 34.1
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.8e-10 70.9 193 39.9
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 2.4e-10 70.5 193 39.4
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 4.1e-10 69.7 47 70.2
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 5.3e-10 69.3 95 44.2
Zm00001eb024820 Zea mays HOM05D006310 ORTHO05D007768 6.9e-10 68.9 40 75.0
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 2.0e-09 67.4 208 32.7
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 2.0e-09 67.4 162 32.7
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 2.0e-09 67.4 38 73.7
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 5.0e-08 62.8 194 29.4
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 6.5e-08 62.4 42 69.0
SEGI_05294 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 6.5e-08 62.4 38 68.4
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 8.5e-08 62.0 35 80.0
SEGI_00832 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.4e-07 61.2 37 70.3
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.9e-07 60.8 37 70.3
Psat4g038040 Pisum sativum HOM05D001903 ORTHO05D001847 2.5e-07 60.5 46 58.7
Duzib160G0284 Durio zibethinus HOM05D001903 ORTHO05D001847 3.2e-07 60.1 46 56.5
Migut.D01072 Erythranthe guttata HOM05D001903 ORTHO05D001847 3.2e-07 60.1 41 63.4
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 3.2e-07 60.1 149 32.2
Medtr4g114690 Medicago truncatula HOM05D001903 ORTHO05D001847 3.2e-07 60.1 46 58.7
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 4.2e-07 59.7 201 33.3
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 4.2e-07 59.7 219 32.0
VMungo1215G2575 Vigna mungo HOM05D001903 ORTHO05D001847 4.2e-07 59.7 46 58.7
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 7.2e-07 58.9 203 29.1
Ca_21670_v3 Cicer arietinum L. HOM05D001903 ORTHO05D001847 9.4e-07 58.5 213 30.0
COL.COLO4_12956 Corchorus olitorius HOM05D001903 ORTHO05D001847 1.2e-06 58.2 46 56.5
SEGI_13914 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.2e-06 58.2 82 53.7
SEGI_41011 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.2e-06 58.2 40 60.0
Atru.chr7.1135 Acer truncatum HOM05D001903 ORTHO05D001847 1.6e-06 57.8 76 63.2
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 1.6e-06 57.8 35 68.6
A10p19730 Brassica napus HOM05D001903 ORTHO05D001847 2.1e-06 57.4 46 54.3
BraA10t44049Z Brassica rapa HOM05D001903 ORTHO05D001847 2.1e-06 57.4 46 54.3
Glyma.13G165800 Glycine max HOM05D001903 ORTHO05D001847 2.1e-06 57.4 46 56.5
Os10g0576600 Oryza sativa ssp. japonica HOM05D006310 ORTHO05D007768 2.1e-06 57.4 39 64.1
TPR.G26499 Trifolium pratense HOM05D001903 ORTHO05D001847 2.7e-06 57.0 46 56.5
Lj4g0003692 Lotus japonicus HOM05D001903 ORTHO05D001847 3.6e-06 56.6 46 54.3
Medtr4g010250 Medicago truncatula HOM05D001903 ORTHO05D001847 3.6e-06 56.6 47 55.3
Sabra18G0110800 Salix brachista HOM05D001903 ORTHO05D001847 3.6e-06 56.6 41 58.5
SEGI_20120 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.6e-06 56.6 40 57.5
Thecc.06G022200 Theobroma cacao HOM05D001903 ORTHO05D001847 3.6e-06 56.6 46 52.2
Eucgr.C02775 Eucalyptus grandis HOM05D001903 ORTHO05D001847 4.7e-06 56.2 47 53.2
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 4.7e-06 56.2 46 56.5
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 4.7e-06 56.2 39 61.5
Phvul.003G165900 Phaseolus vulgaris HOM05D001903 ORTHO05D001847 6.1e-06 55.8 46 54.3
SEGI_05061 Sequoiadendron giganteum HOM05D006310 ORTHO05D007768 6.1e-06 55.8 35 62.9
Sc08g0006520 Simmondsia chinensis HOM05D001903 ORTHO05D001847 6.1e-06 55.8 41 58.5
SGA_v2.0_scaffold37G14772 Striga asiatica HOM05D001903 ORTHO05D001847 6.1e-06 55.8 41 58.5
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 7.9e-06 55.5 45 51.1
Thhalv10014275m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 7.9e-06 55.5 52 50.0
Lj5A71G74 Lonicera japonica HOM05D001903 ORTHO05D001847 7.9e-06 55.5 40 60.0
Manes.04G113400 Manihot esculenta HOM05D001903 ORTHO05D001847 7.9e-06 55.5 46 54.3
Hund00522 Selenicereus undatus HOM05D001903 ORTHO05D001847 7.9e-06 55.5 44 56.8
SEGI_04018 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 7.9e-06 55.5 34 67.6
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 7.9e-06 55.5 198 28.8


User provided reference genes

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